Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 3.9e-102 374.8 186 100.0
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 3.9e-102 374.8 186 100.0
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 96.2
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 96.2
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 96.2
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 96.2
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 9.9e-98 360.1 186 95.7
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-96 356.3 186 95.2
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-96 356.3 186 95.2
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 1.4e-96 356.3 186 95.2
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 7.1e-96 354.0 186 94.1
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.2e-95 353.2 184 95.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.6e-95 352.8 186 94.6
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.6e-95 352.8 186 94.6
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.6e-95 352.8 186 94.6
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 2.1e-95 352.4 186 94.1
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 2.1e-95 352.4 186 94.1
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.1e-95 352.4 186 94.1
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.1e-95 352.4 184 94.6
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 6.6e-94 347.4 186 93.5
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-92 343.2 187 93.0
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-92 343.2 187 93.0
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.6e-92 342.8 184 93.5
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.1e-92 342.4 186 91.9
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 3.6e-92 341.7 184 92.4
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 6.2e-92 340.9 189 91.5
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 8.1e-92 340.5 179 94.4
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 6.9e-91 337.4 183 90.7
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.2e-90 336.7 188 92.6
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 5.8e-90 334.3 186 91.9
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 3.5e-87 325.1 188 89.4
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.3e-86 322.4 185 89.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.0e-86 322.0 186 88.7
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.0e-86 322.0 186 88.7
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 3.0e-86 322.0 188 87.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 3.0e-86 322.0 188 87.8
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 8.7e-86 320.5 183 88.0
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 8.7e-86 320.5 188 89.9
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.7e-86 320.5 188 89.9
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 8.7e-86 320.5 188 89.9
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.7e-86 320.5 188 89.9
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 87.2
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 87.2
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 3.3e-85 318.5 183 88.5
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 6.2e-84 314.3 186 86.0
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 3.1e-83 312.0 186 84.9
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.5e-82 309.7 188 88.3
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 2.2e-81 305.8 191 84.3
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 1.1e-80 303.5 159 95.0
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.0e-78 297.0 184 85.9
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 5.6e-77 291.2 159 92.5
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 8.2e-76 287.3 153 93.5
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.8e-75 286.2 174 87.9
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 5.3e-75 284.6 173 86.7
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 6.9e-75 284.3 182 81.9
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 9.0e-75 283.9 187 79.7
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.5e-74 283.1 173 86.7
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.9e-73 278.9 187 81.3
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 8.4e-73 277.3 161 91.3
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 1.9e-72 276.2 156 91.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.8e-67 259.6 159 83.0
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.0e-65 253.8 188 75.5
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 2.9e-65 252.3 168 82.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 3.0e-62 242.3 147 85.0
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 3.9e-54 215.3 150 76.7
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.4e-53 211.1 134 77.6
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 7.4e-53 211.1 157 74.5
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 7.4e-53 211.1 189 58.7
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 8.2e-52 207.6 110 91.8
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 3.1e-51 205.7 133 82.7
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.0e-50 203.0 178 65.2
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.2e-48 195.7 181 61.9
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.8e-46 189.9 115 86.1
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.8e-46 189.9 178 60.1
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 8.8e-46 187.6 181 59.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 8.8e-46 187.6 181 59.7
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.6e-45 186.0 181 59.1
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.6e-45 186.0 181 59.1
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 5.9e-42 174.9 95 87.4
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.0e-41 171.8 109 81.7
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.5e-40 169.5 109 80.7
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.0e-37 159.8 174 58.0
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 5.3e-35 151.8 84 89.3
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-34 150.6 85 87.1
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 5.9e-34 148.3 72 98.6
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.7e-33 146.7 108 73.1
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-32 144.1 108 72.2
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.5e-32 141.7 86 83.7
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 9.4e-32 141.0 72 94.4
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.4e-32 141.0 107 75.7
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 2.1e-31 139.8 74 93.2
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 4.7e-31 138.7 68 97.1
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 4.7e-31 138.7 68 97.1
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 8.8e-30 134.4 77 87.0
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 1.5e-29 133.7 74 86.5
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-26 123.2 106 67.0
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 1.3e-25 120.6 66 87.9
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.3e-25 119.8 74 79.7
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-24 117.5 70 80.0
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.2e-24 114.8 69 78.3
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.2e-24 114.8 69 79.7
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 8.0e-23 111.3 178 37.1
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.5e-21 107.1 61 85.2
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.0e-21 106.7 66 77.3
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-20 104.0 71 74.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-19 100.9 66 69.7
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-18 97.4 55 83.6
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 4.7e-15 85.5 53 81.1
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.1e-15 85.1 49 81.6
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 8.9e-14 81.3 53 81.1
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.5e-13 78.2 68 60.3
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 2.9e-12 76.3 62 64.5
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 8.3e-12 74.7 53 69.8
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 3.5e-10 69.3 42 81.0
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-09 67.4 36 88.9
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-09 66.6 39 76.9
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.0e-09 66.2 49 69.4
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 1.5e-08 63.9 61 60.7
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 1.9e-08 63.5 32 90.6
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 5.6e-08 62.0 36 75.0
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.2e-07 60.8 39 66.7
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 4.7e-07 58.9 59 62.7
MELO3C030561.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.0e-07 58.2 40 75.0
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.8e-06 57.0 39 71.8


User provided reference genes

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