Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 1.0e-120 436.8 230 100.0
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 4.9e-54 215.3 191 66.5
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 1.4e-53 213.8 198 67.2
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 2.4e-53 213.0 191 66.5
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 4.4e-31 139.0 111 63.1
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 2.4e-29 133.3 99 64.6
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 5.4e-29 132.1 113 59.3
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 7.1e-29 131.7 93 64.5
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 2.1e-28 130.2 100 64.0
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 2.1e-28 130.2 107 58.9
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 7.8e-28 128.3 100 63.0
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 1.0e-27 127.9 107 57.9
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 1.3e-27 127.5 102 62.7
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 2.3e-27 126.7 99 60.6
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 3.0e-27 126.3 91 63.7
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.9e-27 125.9 96 61.5
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 3.9e-27 125.9 132 53.8
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 3.9e-27 125.9 157 49.0
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 6.6e-27 125.2 100 62.0
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 8.7e-27 124.8 98 63.3
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 8.7e-27 124.8 89 66.3
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 1.1e-26 124.4 154 51.3
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 1.1e-26 124.4 90 63.3
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 1.5e-26 124.0 166 47.6
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 1.5e-26 124.0 90 65.6
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.5e-26 124.0 92 62.0
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 1.5e-26 124.0 157 49.0
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 1.9e-26 123.6 102 59.8
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 2.5e-26 123.2 101 60.4
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 3.3e-26 122.9 165 49.7
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 4.3e-26 122.5 99 60.6
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 4.3e-26 122.5 109 59.6
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 5.6e-26 122.1 95 57.9
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 7.3e-26 121.7 116 58.6
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 1.3e-25 120.9 99 58.6
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 2.1e-25 120.2 109 56.9
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 3.6e-25 119.4 97 60.8
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 4.8e-25 119.0 147 48.3
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 4.8e-25 119.0 203 41.9
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 6.2e-25 118.6 85 65.9
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 8.1e-25 118.2 97 58.8
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 8.1e-25 118.2 91 61.5
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 8.1e-25 118.2 96 59.4
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 8.1e-25 118.2 97 58.8
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 1.1e-24 117.9 97 58.8
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.1e-24 117.9 102 60.8
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 1.8e-24 117.1 164 46.3
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 1.8e-24 117.1 86 66.3
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 1.8e-24 117.1 147 51.7
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.4e-24 116.7 149 47.0
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 3.1e-24 116.3 153 45.8
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 5.3e-24 115.5 91 58.2
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 6.9e-24 115.2 79 68.4
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 6.9e-24 115.2 79 68.4
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 6.9e-24 115.2 159 46.5
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 6.9e-24 115.2 109 56.0
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 9.0e-24 114.8 84 63.1
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 9.0e-24 114.8 84 63.1
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 9.0e-24 114.8 150 47.3
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 1.2e-23 114.4 164 46.3
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.2e-23 114.4 137 48.9
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.2e-23 114.4 137 48.9
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 1.2e-23 114.4 89 61.8
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 1.5e-23 114.0 126 49.2
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 1.5e-23 114.0 86 62.8
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 2.0e-23 113.6 79 67.1
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 2.0e-23 113.6 99 57.6
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.0e-23 113.6 92 58.7
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 2.0e-23 113.6 99 54.5
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 2.0e-23 113.6 90 57.8
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 2.0e-23 113.6 85 61.2
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 2.0e-23 113.6 94 60.6
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 2.0e-23 113.6 94 56.4
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 2.6e-23 113.2 79 67.1
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 2.6e-23 113.2 169 43.8
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 2.6e-23 113.2 100 56.0
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 2.6e-23 113.2 91 58.2
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 2.6e-23 113.2 142 47.9
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 3.4e-23 112.8 97 55.7
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 4.4e-23 112.5 140 50.7
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 5.8e-23 112.1 100 55.0
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 5.8e-23 112.1 143 45.5
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 7.6e-23 111.7 130 49.2
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 9.9e-23 111.3 85 61.2
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 1.3e-22 110.9 151 45.7
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 1.3e-22 110.9 79 67.1
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 1.7e-22 110.5 79 64.6
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.2e-22 110.2 159 44.7
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.2e-22 110.2 159 44.7
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 2.2e-22 110.2 162 45.7
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 8.4e-22 108.2 79 64.6
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 8.4e-22 108.2 79 64.6
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 8.4e-22 108.2 79 64.6
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 8.4e-22 108.2 140 47.9
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 1.4e-21 107.5 144 46.5
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 1.9e-21 107.1 146 48.6
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 1.9e-21 107.1 120 50.0
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 2.4e-21 106.7 97 55.7
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 2.4e-21 106.7 143 44.8
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 2.4e-21 106.7 187 43.9
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 3.2e-21 106.3 75 64.0
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 3.2e-21 106.3 128 49.2
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 5.4e-21 105.5 123 47.2
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 7.1e-21 105.1 194 41.2
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 7.1e-21 105.1 194 42.3
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 7.1e-21 105.1 95 52.6
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 9.3e-21 104.8 152 47.4
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.6e-20 104.0 183 42.6
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 1.6e-20 104.0 142 47.9
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 1.6e-20 104.0 141 48.2
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 1.6e-20 104.0 95 53.7
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 3.5e-20 102.8 150 45.3
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 3.5e-20 102.8 198 42.4
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 7.8e-20 101.7 80 60.0
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.3e-19 100.9 120 50.0
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 1.3e-19 100.9 97 51.5
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 1.3e-19 100.9 84 59.5
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 1.7e-19 100.5 191 41.4
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 2.3e-19 100.1 183 36.6
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 3.0e-19 99.8 96 52.1
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.9e-19 99.4 140 45.7
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.9e-19 99.4 143 44.1
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 1.1e-18 97.8 192 40.6
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 1.1e-18 97.8 148 44.6
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.5e-18 97.4 67 62.7
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 1.9e-18 97.1 149 46.3
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 2.5e-18 96.7 80 55.0
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 4.3e-18 95.9 87 49.4
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 5.6e-18 95.5 129 45.0
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 9.6e-18 94.7 130 44.6
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 1.3e-17 94.4 87 52.9
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 2.8e-17 93.2 86 55.8
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.8e-17 93.2 78 56.4
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 4.8e-17 92.4 81 51.9
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 4.8e-17 92.4 80 56.2
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 1.4e-16 90.9 100 51.0
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 1.8e-16 90.5 96 52.1
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.4e-16 90.1 83 55.4
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 3.1e-16 89.7 77 53.2
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 5.3e-16 89.0 131 47.3
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 6.9e-16 88.6 70 58.6
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 6.9e-16 88.6 91 53.8
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 1.2e-15 87.8 100 48.0
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 4.5e-15 85.9 80 51.2
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 7.6e-15 85.1 83 53.0
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 9.9e-15 84.7 95 50.5
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.3e-14 84.3 79 51.9
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 1.7e-14 84.0 159 39.6
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.7e-14 84.0 84 50.0
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 2.2e-14 83.6 56 62.5
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 2.2e-14 83.6 77 50.6
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 2.2e-14 83.6 53 64.2
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 1.4e-13 80.9 163 40.5
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.4e-13 80.1 118 42.4
Lalb_Chr18g0060571 Lupinus albus HOM05D000343 ORTHO05D009884 7.1e-13 78.6 91 50.5
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 9.3e-13 78.2 105 47.6
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.6e-12 77.4 72 52.8
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 1.6e-12 77.4 94 46.8
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.3e-11 73.6 70 51.4
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 3.0e-11 73.2 111 43.2
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 3.0e-11 73.2 139 41.7
Pp3c19_14990 Physcomitrium patens HOM05D000343 ORTHO05D009884 9.6e-10 68.2 108 43.5
Pp3c16_16360 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.1e-08 64.7 105 39.0
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.4e-08 63.5 54 59.3
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.4e-08 63.5 54 59.3
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 6.9e-08 62.0 178 33.7
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.5e-07 60.8 54 57.4
SEGI_22608 Sequoiadendron giganteum HOM05D000343 ORTHO05D002777 3.4e-07 59.7 58 50.0
Eucgr.L00192 Eucalyptus grandis HOM05D000343 ORTHO05D009884 5.8e-07 58.9 52 53.8
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 5.8e-07 58.9 38 63.2
CDE06G1102 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 6.4e-06 55.5 91 34.1
CDE07G1800 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 8.4e-06 55.1 91 34.1


User provided reference genes

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