Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.4e-162 576.2 293 100.0
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 2.3e-80 303.1 211 76.3
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.6e-78 297.0 376 51.1
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 3.6e-78 295.8 234 69.7
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 2.6e-68 263.1 221 63.8
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.3e-67 260.8 200 69.0
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.7e-67 259.2 221 62.4
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.1e-66 257.7 202 65.8
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.9e-66 256.9 221 63.8
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 7.1e-66 255.0 202 65.8
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 7.1e-66 255.0 203 64.5
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.2e-65 254.2 206 65.5
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 4.6e-65 252.3 206 65.5
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.0e-64 251.1 203 64.0
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 1.3e-64 250.8 201 66.7
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.3e-64 250.8 203 63.1
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.7e-64 250.4 200 67.0
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 2.3e-64 250.0 203 63.1
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.9e-64 249.2 198 63.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 5.1e-64 248.8 201 64.2
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 6.6e-64 248.4 235 58.7
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.5e-63 247.3 180 70.0
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.9e-63 246.9 221 61.5
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 3.3e-63 246.1 205 62.4
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.3e-63 246.1 216 62.0
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.6e-63 245.4 166 72.9
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 7.3e-63 245.0 201 63.2
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 7.3e-63 245.0 235 57.0
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 7.3e-63 245.0 203 63.1
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 9.5e-63 244.6 208 63.5
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.8e-62 243.0 199 61.8
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 4.7e-62 242.3 214 61.7
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.1e-61 241.1 235 57.0
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.1e-61 241.1 251 54.6
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.4e-61 240.7 251 54.2
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.8e-61 240.4 235 56.6
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.8e-61 240.4 235 56.6
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.4e-61 240.0 205 61.5
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.4e-61 240.0 180 67.2
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 3.1e-61 239.6 199 66.8
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 4.0e-61 239.2 235 56.6
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 4.0e-61 239.2 235 56.6
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 6.8e-61 238.4 235 56.2
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 6.8e-61 238.4 235 56.2
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.4e-60 236.1 208 60.1
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 5.8e-60 235.3 203 62.6
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 7.6e-60 235.0 203 61.1
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 9.9e-60 234.6 207 62.3
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 9.9e-60 234.6 206 61.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 9.9e-60 234.6 202 62.9
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.7e-59 233.8 206 60.2
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.7e-59 233.8 251 53.8
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.2e-59 233.4 206 60.2
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.9e-59 233.0 206 60.7
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.9e-59 233.0 206 60.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.9e-59 232.3 235 55.3
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 6.4e-59 231.9 173 68.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 6.4e-59 231.9 206 59.2
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.9e-58 230.3 334 46.4
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.4e-58 229.9 176 66.5
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 2.4e-58 229.9 215 57.7
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 3.2e-58 229.6 206 59.7
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 5.4e-58 228.8 235 55.3
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 5.4e-58 228.8 246 53.7
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 5.4e-58 228.8 177 65.5
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 7.1e-58 228.4 177 65.0
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.2e-58 228.0 235 56.2
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 9.2e-58 228.0 147 73.5
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.2e-57 227.6 207 60.9
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.6e-57 227.3 148 70.9
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 4.6e-57 225.7 212 57.5
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 4.6e-57 225.7 177 63.8
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 4.6e-57 225.7 203 59.6
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.0e-56 224.6 177 64.4
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.3e-56 224.2 203 59.6
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 3.0e-56 223.0 177 64.4
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 3.9e-56 222.6 177 62.7
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 3.9e-56 222.6 211 57.3
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.5e-55 220.7 147 71.4
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 2.5e-55 219.9 201 58.2
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.1e-54 216.9 177 62.7
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 3.1e-53 213.0 203 56.7
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 6.9e-53 211.8 154 66.9
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 6.9e-53 211.8 157 65.0
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 9.0e-53 211.5 189 58.7
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 2.6e-52 209.9 203 55.2
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.7e-51 207.2 180 61.7
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.7e-51 207.2 203 56.7
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 2.2e-51 206.8 147 67.3
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.9e-51 206.5 180 58.9
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 4.9e-51 205.7 193 57.0
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 1.4e-50 204.1 188 57.4
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 3.2e-50 203.0 206 53.9
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 7.1e-50 201.8 177 59.9
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 9.3e-50 201.4 203 55.7
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 3.5e-49 199.5 180 59.4
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 6.0e-49 198.7 213 51.6
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.9e-48 196.1 199 54.3
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.1e-47 194.5 203 54.2
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 4.3e-47 192.6 199 54.3
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 9.6e-47 191.4 213 50.7
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 4.8e-46 189.1 220 50.0
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 2.4e-45 186.8 177 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.1e-45 186.4 153 61.4
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 1.5e-44 184.1 179 55.9
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.0e-44 183.7 153 60.8
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.3e-43 181.0 114 71.9
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 6.4e-43 178.7 114 71.9
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-42 177.2 165 57.6
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 7.1e-42 175.3 175 55.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 3.5e-41 172.9 121 69.4
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 6.0e-41 172.2 201 53.2
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.9e-40 169.5 171 53.8
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 6.7e-40 168.7 153 58.8
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.3e-39 166.4 174 50.6
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.6e-36 155.2 154 55.8
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 6.5e-35 152.1 201 46.3
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.6e-33 147.5 152 52.0
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.5e-31 141.0 168 55.4
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.6e-31 138.3 87 73.6
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.6e-31 138.3 87 73.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 4.8e-30 136.0 83 73.5
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 3.8e-27 126.3 185 45.4
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 3.8e-27 126.3 153 43.8
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.4e-21 107.1 177 39.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 7.7e-20 102.1 113 52.2
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 2.9e-19 100.1 213 36.6
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 6.1e-17 92.4 58 72.4
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.8e-14 82.8 67 61.2
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.8e-11 73.2 139 31.7
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 8.5e-11 72.0 209 33.5
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 3.0e-08 63.5 63 60.3
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 2.0e-07 60.8 81 49.4
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 3.3e-07 60.1 81 49.4
CsaV3_1G026630 Cucumis sativus L. HOM05D004380 ORTHO05D005134 3.7e-06 56.6 35 80.0
CsaV3_7G018470 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.8e-06 56.2 34 79.4


User provided reference genes

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