Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.0e-110 402.5 217 100.0
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 3.7e-88 328.6 219 76.7
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.5e-84 316.6 224 78.6
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 3.3e-84 315.5 251 70.9
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.1e-79 300.4 225 72.4
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.0e-69 267.3 228 61.4
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.3e-69 266.2 228 63.2
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 3.0e-69 265.8 202 67.8
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 3.0e-69 265.8 229 60.7
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.1e-69 265.0 228 63.2
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.3e-68 262.3 223 61.0
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.3e-68 261.9 223 61.0
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 5.6e-68 261.5 229 63.3
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 3.6e-67 258.8 222 62.2
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 5.2e-66 255.0 229 60.3
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.2e-65 253.8 210 65.2
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 1.5e-65 253.4 226 59.3
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 4.4e-65 251.9 229 61.1
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.8e-65 251.5 225 60.0
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.7e-64 250.0 223 61.4
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.7e-64 250.0 231 62.8
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 2.9e-64 249.2 230 63.9
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.9e-64 249.2 225 59.1
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 8.4e-64 247.7 220 60.9
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.1e-63 247.3 225 59.6
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.1e-63 247.3 225 59.6
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 3.2e-63 245.7 224 56.7
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 7.1e-63 244.6 224 58.5
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.2e-62 243.8 229 63.8
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 4.6e-62 241.9 231 56.7
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 2.3e-61 239.6 232 60.8
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.3e-61 239.6 233 54.5
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 5.1e-61 238.4 221 57.5
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 5.1e-61 238.4 239 60.3
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 5.1e-61 238.4 229 58.5
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 6.6e-61 238.0 224 62.5
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.1e-60 237.3 227 58.1
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.1e-60 237.3 221 57.9
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.5e-60 236.9 226 57.1
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.9e-60 236.5 223 57.4
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 2.5e-60 236.1 242 55.0
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.6e-59 233.4 229 55.0
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 2.1e-59 233.0 226 56.6
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 2.1e-59 233.0 226 62.8
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.8e-59 232.6 226 54.0
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.6e-59 232.3 222 58.6
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 6.2e-59 231.5 224 55.8
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 8.1e-59 231.1 230 52.6
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-58 229.9 221 57.0
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.8e-58 229.9 221 57.0
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.8e-58 229.9 158 71.5
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 2.4e-58 229.6 234 53.4
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 3.1e-58 229.2 218 57.3
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 4.0e-58 228.8 220 55.5
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 5.2e-58 228.4 226 56.6
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.2e-58 228.4 226 56.6
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 6.9e-58 228.0 227 58.1
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 6.9e-58 228.0 230 52.2
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 1.5e-57 226.9 229 58.5
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.8e-57 224.9 243 53.1
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 5.8e-57 224.9 227 54.6
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 7.6e-57 224.6 212 60.4
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 7.6e-57 224.6 215 57.7
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 9.9e-57 224.2 214 58.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 9.9e-57 224.2 228 54.4
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.3e-56 223.8 233 54.5
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 1.7e-56 223.4 227 54.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.8e-56 222.2 231 51.5
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 4.9e-56 221.9 229 52.4
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.4e-56 221.5 235 50.6
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.4e-56 221.5 234 50.4
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-55 220.7 205 55.1
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.1e-55 220.7 239 50.2
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.4e-55 220.3 233 50.6
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.4e-55 220.3 152 67.8
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.2e-55 219.2 206 55.3
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 3.2e-55 219.2 224 53.6
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 4.2e-55 218.8 223 55.6
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 5.4e-55 218.4 229 54.6
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.4e-55 218.4 240 49.2
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.4e-55 218.4 233 50.6
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 7.1e-55 218.0 210 61.9
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 9.3e-55 217.6 204 59.8
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 9.3e-55 217.6 224 52.2
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 1.2e-54 217.2 228 53.1
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.6e-54 216.9 239 50.2
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-54 216.5 224 52.2
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 2.1e-54 216.5 232 53.4
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.5e-54 215.7 228 58.8
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 3.5e-54 215.7 206 54.9
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 4.6e-54 215.3 225 53.8
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 6.0e-54 214.9 224 56.2
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.0e-53 214.2 241 50.6
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-53 214.2 202 57.4
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.3e-53 213.0 224 54.5
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 2.3e-53 213.0 218 51.8
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 3.0e-53 212.6 230 51.3
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 3.0e-53 212.6 228 51.8
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 3.9e-53 212.2 203 61.6
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 8.7e-53 211.1 237 50.6
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 8.7e-53 211.1 186 55.9
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.1e-52 210.7 228 53.1
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.1e-52 210.7 206 62.1
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 2.5e-52 209.5 217 53.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 2.5e-52 209.5 152 65.8
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 4.3e-52 208.8 214 50.5
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 7.3e-52 208.0 195 64.6
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 9.6e-52 207.6 235 49.8
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 2.1e-51 206.5 235 49.4
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.8e-51 206.1 217 53.5
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 4.8e-51 205.3 178 61.2
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 3.1e-50 202.6 228 53.5
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.2e-49 200.7 230 48.3
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-49 200.7 219 50.2
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 2.0e-49 199.9 203 53.2
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 5.8e-49 198.4 148 64.2
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.8e-49 198.4 230 50.0
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.3e-48 197.2 221 51.1
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 2.9e-48 196.1 153 60.8
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 2.9e-48 196.1 151 62.9
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.9e-48 196.1 156 62.2
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 1.1e-47 194.1 130 72.3
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.4e-47 193.7 234 50.9
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.2e-47 192.6 219 49.8
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 3.2e-47 192.6 245 44.5
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 4.2e-47 192.2 221 48.4
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 5.4e-47 191.8 163 57.7
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 1.0e-45 187.6 223 50.7
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 3.0e-45 186.0 251 43.0
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.1e-43 179.9 145 61.4
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 8.1e-43 177.9 206 56.3
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.1e-42 177.6 247 46.6
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.0e-42 175.6 219 46.6
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.2e-40 169.9 154 56.5
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 3.2e-39 166.0 142 61.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.7e-38 162.9 219 43.8
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 7.4e-36 154.8 128 60.9
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 4.6e-30 135.6 239 40.2
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.3e-29 134.0 213 40.8
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 6.7e-29 131.7 194 47.4
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 4.2e-23 112.5 162 47.5
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.3e-21 107.5 66 71.2
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.8e-21 107.1 73 65.8
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 2.3e-21 106.7 212 33.5
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 7.4e-20 101.7 190 40.0
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 2.2e-19 100.1 58 74.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.8e-19 99.8 55 81.8
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 3.7e-19 99.4 56 76.8
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 6.5e-16 88.6 85 55.3
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.3e-13 80.1 76 48.7
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 4.4e-12 75.9 72 52.8
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-09 67.0 39 74.4
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.7e-08 63.9 50 54.0
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 2.9e-08 63.2 67 41.8
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 6.5e-08 62.0 57 47.4
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 1.2e-06 57.8 30 86.7
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.6e-06 57.4 46 56.5


User provided reference genes

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