Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 6.8e-153 543.9 263 100.0
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.9e-128 460.3 266 83.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.4e-121 439.1 268 80.2
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.3e-119 433.3 268 78.7
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.3e-110 400.6 243 82.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 2.4e-89 332.8 265 60.0
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-83 313.9 264 56.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 5.7e-83 311.6 265 55.8
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.5e-80 302.0 265 57.0
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.2e-78 294.7 263 55.1
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.2e-77 293.9 245 58.0
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.1e-77 293.1 272 54.8
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 6.1e-77 291.6 263 54.8
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.0e-76 290.8 268 56.3
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.8e-76 290.0 264 53.4
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 6.8e-76 288.1 265 55.5
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.5e-75 287.0 267 55.4
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.0e-75 286.6 265 53.6
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.3e-74 283.9 267 55.8
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.3e-74 283.9 269 52.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 4.8e-74 282.0 265 54.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 6.3e-74 281.6 263 51.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 6.3e-74 281.6 267 53.9
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.8e-73 280.0 263 53.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.8e-73 280.0 270 53.3
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 4.1e-73 278.9 267 53.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 9.1e-73 277.7 268 54.1
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 9.1e-73 277.7 270 51.1
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.2e-72 277.3 268 54.1
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.2e-72 277.3 263 49.8
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 1.2e-72 277.3 260 51.5
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.6e-72 276.9 267 53.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.7e-72 276.2 268 53.7
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 3.5e-72 275.8 265 51.3
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.5e-72 275.4 267 52.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.3e-71 273.9 266 53.0
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.7e-71 273.5 254 53.5
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.7e-71 273.5 263 52.9
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.7e-71 273.5 266 52.6
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-71 272.3 268 53.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 5.0e-71 271.9 247 53.8
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 8.6e-71 271.2 273 52.0
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.1e-70 270.8 265 52.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.5e-70 270.4 264 52.3
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 9.5e-70 267.7 264 52.7
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 2.1e-69 266.5 264 51.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.8e-69 266.2 266 51.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.1e-69 265.0 246 54.5
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 8.0e-69 264.6 267 50.6
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.0e-69 264.6 268 52.6
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 8.0e-69 264.6 266 51.5
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-68 264.2 268 51.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.4e-68 263.8 266 51.5
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.0e-68 262.7 268 51.1
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 4.0e-68 262.3 268 50.0
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 5.2e-68 261.9 211 59.2
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 3.4e-67 259.2 257 48.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 5.7e-67 258.5 268 50.7
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 9.8e-67 257.7 263 51.3
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.2e-66 256.5 255 50.2
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.4e-65 253.8 266 50.8
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 2.4e-65 253.1 248 49.6
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.4e-65 253.1 282 47.5
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.4e-65 253.1 248 52.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.4e-65 251.9 231 51.9
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.2e-65 251.1 248 48.8
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.0e-64 250.0 230 52.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 2.7e-64 249.6 265 47.5
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 4.5e-64 248.8 263 48.7
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 5.9e-64 248.4 261 48.7
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.3e-63 247.3 253 48.6
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.7e-63 246.9 246 50.4
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.3e-63 246.5 264 48.5
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.8e-63 245.7 212 55.2
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 6.6e-63 245.0 250 50.4
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 2.5e-62 243.0 226 52.7
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 3.3e-62 242.7 250 50.0
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.5e-62 241.1 247 49.8
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-61 240.4 200 55.5
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.6e-61 239.2 252 50.0
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.8e-60 236.9 258 46.9
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.3e-60 236.5 221 51.1
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 3.0e-60 236.1 274 48.5
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.0e-59 233.4 273 48.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.4e-59 232.6 274 46.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.4e-59 232.3 262 42.7
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 4.4e-59 232.3 190 56.8
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.3e-58 230.7 253 44.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.7e-58 230.3 234 47.4
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.1e-57 227.6 265 44.9
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.2e-57 226.1 263 44.1
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 3.2e-57 226.1 265 44.2
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 3.2e-57 226.1 265 48.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 7.0e-57 224.9 266 43.6
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 9.2e-57 224.6 257 45.1
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.2e-56 224.2 287 42.9
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.6e-56 223.8 267 43.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 2.0e-56 223.4 263 44.1
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 2.0e-56 223.4 263 44.1
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 2.0e-56 223.4 263 44.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.7e-56 223.0 266 44.7
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 3.5e-56 222.6 211 47.9
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.0e-55 221.1 288 46.9
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.0e-55 221.1 202 52.5
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.7e-55 220.3 250 42.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.3e-55 219.9 264 43.6
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 3.0e-55 219.5 269 42.8
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.9e-55 219.2 268 44.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 6.6e-55 218.4 264 41.3
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.1e-54 217.6 225 47.1
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.1e-54 217.6 179 58.1
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.5e-54 217.2 264 42.4
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.3e-54 216.1 245 46.1
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.3e-54 215.7 265 43.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.3e-54 215.7 265 43.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 7.3e-54 214.9 265 46.0
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.1e-53 213.4 265 41.5
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.1e-53 213.4 265 41.5
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.1e-53 213.4 259 41.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-53 213.0 245 45.7
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 8.0e-53 211.5 280 40.4
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 8.0e-53 211.5 252 46.8
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.1e-52 211.1 248 43.5
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.1e-52 211.1 254 41.3
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.8e-52 210.3 218 50.5
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.3e-52 209.9 214 45.8
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 4.0e-52 209.1 252 45.2
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 8.9e-52 208.0 134 78.4
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 8.9e-52 208.0 232 49.1
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.6e-51 206.5 211 46.9
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 3.4e-51 206.1 250 40.8
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.9e-50 203.0 311 39.9
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 6.4e-50 201.8 221 43.0
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 8.3e-50 201.4 212 46.7
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 8.3e-50 201.4 265 40.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.1e-49 201.1 180 52.2
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 9.2e-49 198.0 242 43.8
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.6e-48 195.7 212 43.4
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 2.3e-47 193.4 276 40.6
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.1e-46 191.0 159 57.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.9e-46 190.3 179 50.8
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.6e-45 187.2 225 44.0
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.8e-45 186.4 261 38.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 6.2e-45 185.3 171 51.5
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.5e-43 180.6 188 49.5
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 2.6e-43 179.9 244 43.4
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-42 177.6 263 40.7
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.7e-42 176.0 263 37.3
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 7.8e-40 168.3 181 49.7
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-39 167.2 242 38.8
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.9e-39 166.0 143 57.3
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 6.6e-39 165.2 236 41.9
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-35 154.1 219 41.6
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.8e-34 149.4 180 43.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.9e-33 147.1 236 42.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.7e-32 143.3 222 36.0
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 3.5e-32 142.9 163 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.3e-31 140.2 302 30.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 4.3e-30 136.0 318 27.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 7.3e-30 135.2 241 34.0
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.2e-29 134.4 125 55.2
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.6e-29 134.0 223 36.3
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.1e-25 121.3 225 32.0
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.3e-25 118.2 195 40.5
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-24 117.9 167 39.5
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.7e-24 116.7 257 32.3
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.0e-24 115.5 81 64.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-22 110.5 262 29.0
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.6e-21 107.5 136 40.4
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 2.8e-21 106.7 74 63.5
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.8e-20 104.0 263 29.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.1e-20 103.2 85 52.9
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.2e-18 97.1 94 51.1
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 8.4e-18 95.1 64 78.1
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 4.6e-16 89.4 132 38.6
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.3e-13 81.3 89 53.9
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 6.2e-13 79.0 144 32.6
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-13 78.6 183 31.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-11 73.6 95 43.2
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 7.6e-11 72.0 46 65.2
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.4e-09 67.0 41 70.7
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 3.2e-09 66.6 69 49.3
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 6.0e-08 62.4 59 50.8
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.5e-06 57.8 100 34.0
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.6e-06 55.8 59 47.5


User provided reference genes

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