Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 1.8e-43 178.7 80 100.0
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 1.9e-34 148.7 82 84.1
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 9.0e-32 139.8 80 83.8
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 9.0e-32 139.8 80 83.8
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 4.5e-31 137.5 80 83.8
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 4.5e-31 137.5 80 83.8
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 4.5e-31 137.5 80 83.8
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 5.9e-31 137.1 82 79.3
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 2.9e-30 134.8 81 81.5
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.4e-29 132.5 69 88.4
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 3.2e-29 131.3 82 79.3
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 1.2e-28 129.4 82 78.0
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 76.8
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 76.8
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 76.8
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 76.8
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 3.6e-28 127.9 82 76.8
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.6e-28 127.9 82 76.8
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 4.6e-28 127.5 82 75.6
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 6.1e-28 127.1 82 76.8
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 7.9e-28 126.7 82 75.6
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 1.4e-27 125.9 82 76.8
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.4e-27 125.9 82 74.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 3.0e-27 124.8 79 77.2
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 5.1e-27 124.0 55 100.0
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 5.1e-27 124.0 82 74.4
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 6.7e-27 123.6 82 74.4
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 6.7e-27 123.6 82 73.2
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 6.7e-27 123.6 82 73.2
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 8.8e-27 123.2 77 77.9
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 1.5e-26 122.5 82 75.6
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 3.3e-26 121.3 78 75.6
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 4.3e-26 120.9 54 98.1
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 5.7e-26 120.6 77 76.6
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 5.7e-26 120.6 81 74.1
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 9.7e-26 119.8 81 71.6
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 1.7e-25 119.0 56 94.6
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 2.2e-25 118.6 82 74.4
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 2.8e-25 118.2 55 94.5
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 4.8e-25 117.5 80 76.2
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 8.2e-25 116.7 55 94.5
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 1.1e-24 116.3 82 70.7
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.1e-24 116.3 82 72.0
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 1.4e-24 115.9 77 74.0
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 2.4e-24 115.2 55 94.5
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 6.9e-24 113.6 55 90.9
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 9.1e-24 113.2 82 72.0
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-23 112.1 81 70.4
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-23 112.1 81 70.4
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.6e-23 111.7 81 69.1
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.6e-23 111.7 81 69.1
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 4.5e-23 110.9 71 76.1
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 7.7e-23 110.2 69 78.3
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 7.7e-23 110.2 69 78.3
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 7.7e-23 110.2 69 78.3
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.3e-22 109.4 72 73.6
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.8e-22 107.8 75 72.0
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 5.0e-22 107.5 55 87.3
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 5.0e-22 107.5 76 71.1
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 5.0e-22 107.5 76 71.1
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 5.0e-22 107.5 76 71.1
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 5.0e-22 107.5 76 71.1
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 5.0e-22 107.5 76 71.1
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 1.1e-21 106.3 52 92.3
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 3.2e-21 104.8 69 73.9
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 3.2e-21 104.8 74 68.9
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 1.2e-20 102.8 70 72.9
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 1.6e-20 102.4 55 85.5
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.7e-20 101.7 78 65.4
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 4.7e-20 100.9 47 93.6
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-18 96.3 44 95.5
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 1.1e-18 96.3 49 89.8
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 1.5e-18 95.9 58 79.3
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 2.6e-18 95.1 47 93.6
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 2.6e-18 95.1 47 93.6
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 2.6e-18 95.1 47 93.6
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 2.6e-18 95.1 46 87.0
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-18 95.1 47 93.6
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-18 95.1 47 93.6
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-18 95.1 47 93.6
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-18 95.1 47 93.6
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-18 95.1 47 93.6
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-18 95.1 47 93.6
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 4.4e-18 94.4 48 91.7
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 7.4e-18 93.6 82 62.2
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 1.3e-17 92.8 46 93.5
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 2.2e-17 92.0 49 87.8
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 3.7e-17 91.3 54 74.1
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 3.1e-16 88.2 47 89.4
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 1.6e-15 85.9 50 80.0
BolC7t43855H Brassica oleracea HOM05D001200 ORTHO05D009713 3.8e-14 81.3 38 94.7
BraSC138t45535Z Brassica rapa HOM05D001200 ORTHO05D009713 5.0e-14 80.9 39 89.7
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.5e-13 78.6 40 90.0
Hund03918 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.5e-13 78.6 43 81.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 4.2e-13 77.8 38 92.1
Medtr4g026420 Medicago truncatula HOM05D001200 ORTHO05D009713 5.5e-13 77.4 75 54.7
Hund10653 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.1e-12 75.5 49 77.6
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 4.7e-12 74.3 38 86.8
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 7.5e-10 67.0 33 90.9
CsaV3_6G032290 Cucumis sativus L. HOM05D001200 ORTHO05D002731 1.2e-07 59.7 32 78.1
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 1.6e-07 59.3 26 96.2
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-07 57.4 28 89.3
Aa31LG10G9900 Aethionema arabicum HOM05D000002 ORTHO05D000001 2.2e-06 55.5 31 77.4
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 2.9e-06 55.1 27 85.2


User provided reference genes

Program Settings