Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.9e-239 832.0 407 100.0
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.4e-199 698.0 410 84.1
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 8.3e-190 667.2 412 79.9
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.6e-188 662.9 410 79.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-167 593.6 401 69.8
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.9e-165 586.3 407 69.3
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 7.1e-165 584.3 401 69.3
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.7e-164 582.4 409 69.9
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.5e-164 582.0 401 70.3
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 7.8e-164 580.9 401 69.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.0e-163 580.5 405 68.9
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.3e-163 579.3 406 70.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.0e-163 578.9 401 70.3
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 8.6e-163 577.4 411 66.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 4.3e-162 575.1 407 68.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.6e-162 574.7 409 69.4
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.1e-161 572.8 401 67.3
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.1e-161 572.8 401 68.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 8.1e-161 570.9 405 67.7
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 8.1e-161 570.9 405 67.9
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 8.1e-161 570.9 405 66.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-160 570.5 402 69.7
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.8e-160 569.7 397 69.0
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.1e-160 568.9 408 68.4
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.0e-160 568.5 406 66.0
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.8e-160 567.8 396 69.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 4.4e-159 565.1 396 68.2
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.7e-158 563.1 405 66.9
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.7e-158 563.1 405 66.9
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.8e-158 562.0 401 68.1
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.4e-158 561.2 396 67.7
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.9e-157 559.7 408 66.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.2e-157 558.5 406 64.8
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.6e-156 556.6 406 66.5
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 7.8e-156 554.3 404 65.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 7.8e-156 554.3 404 65.8
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 7.8e-156 554.3 400 66.5
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.0e-155 553.9 404 65.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.0e-155 553.9 404 65.8
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.0e-155 553.9 403 65.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.3e-155 553.5 404 65.8
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.3e-155 553.5 408 65.9
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-154 550.1 403 66.0
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.9e-154 549.7 402 65.4
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 4.3e-154 548.5 408 64.7
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-153 547.0 405 65.4
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.8e-153 545.8 406 64.8
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 4.7e-153 545.0 405 64.4
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.7e-153 545.0 400 64.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 6.2e-153 544.7 404 64.4
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.1e-152 542.3 406 64.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 9.0e-152 540.8 420 63.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 3.4e-151 538.9 406 64.5
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.9e-151 537.3 402 64.7
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.2e-150 536.2 405 64.7
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.2e-150 536.2 384 65.4
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 4.9e-150 535.0 391 64.2
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.1e-149 533.9 391 64.7
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.1e-149 533.9 407 65.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.4e-149 533.5 400 62.0
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 4.2e-149 531.9 395 66.6
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.6e-148 528.5 389 63.8
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.6e-148 528.5 404 63.1
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.3e-147 526.9 400 64.0
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.5e-146 523.5 416 61.3
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.5e-146 523.5 405 62.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.9e-146 523.1 409 61.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.9e-146 523.1 408 62.3
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 9.6e-146 520.8 393 63.9
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.3e-145 520.4 402 62.7
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 4.8e-145 518.5 391 63.7
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 8.1e-145 517.7 389 63.2
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.1e-144 517.3 406 59.9
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.1e-144 517.3 400 63.0
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.1e-144 517.3 393 63.9
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.4e-144 516.9 405 62.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.5e-143 513.5 394 61.4
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 5.8e-143 511.5 402 61.9
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 7.6e-143 511.1 401 59.4
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.7e-142 510.0 413 60.3
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.2e-142 509.6 399 61.2
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.9e-142 509.2 406 59.9
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 4.9e-142 508.4 416 59.4
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.4e-142 508.1 402 61.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.4e-141 506.9 398 60.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.9e-141 506.5 388 62.1
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.2e-141 505.8 404 62.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.2e-140 503.8 388 62.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.6e-140 503.4 388 60.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 3.5e-140 502.3 403 59.1
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 7.9e-140 501.1 404 64.1
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 7.9e-140 501.1 403 60.3
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-139 500.4 389 61.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.3e-139 500.4 399 58.1
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 3.9e-139 498.8 415 58.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 8.7e-139 497.7 403 59.3
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.9e-138 496.5 409 58.7
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.9e-138 496.5 393 60.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.5e-138 496.1 402 59.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.4e-138 494.6 408 59.1
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.1e-137 493.0 395 60.5
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.1e-136 490.7 402 58.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-136 489.6 384 60.2
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-136 489.6 384 60.2
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.1e-136 489.2 378 61.6
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.1e-136 489.2 378 61.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 5.3e-136 488.4 416 57.2
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 5.8e-135 485.0 387 59.7
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.9e-134 482.6 416 57.2
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.8e-134 482.3 394 58.9
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.5e-133 479.6 394 58.4
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.1e-132 476.5 396 57.3
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.5e-130 470.3 397 57.2
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.2e-129 464.9 386 57.5
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.4e-128 463.0 400 56.0
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.0e-128 462.2 396 56.1
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.0e-123 447.6 413 55.0
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-122 444.1 416 55.3
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.8e-121 439.5 392 55.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.7e-118 430.3 389 51.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.4e-117 427.2 402 56.5
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.7e-116 422.9 409 50.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 4.3e-114 415.6 403 54.6
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 8.2e-113 411.4 411 50.1
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.0e-110 404.4 402 54.2
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-110 403.7 401 54.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.2e-109 399.1 377 56.2
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.7e-102 377.1 393 50.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 9.4e-101 371.3 402 52.2
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 9.4e-101 371.3 409 47.2
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 6.1e-100 368.6 403 51.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 3.3e-98 362.8 415 47.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.0e-94 351.3 411 44.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 5.2e-91 339.0 400 46.8
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.0e-88 328.6 402 47.0
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.2e-85 318.5 254 57.5
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.8e-78 296.2 389 43.2
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 5.0e-78 295.8 392 42.6
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.5e-77 294.3 397 42.6
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 7.2e-77 292.0 401 41.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 7.3e-69 265.4 405 39.3
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.9e-65 252.7 227 58.1
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.2e-58 231.5 186 59.1
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 7.8e-55 218.8 426 32.2
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 6.2e-52 209.1 156 64.1
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.5e-45 187.2 174 52.9
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.9e-35 152.5 386 28.2
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.6e-28 130.2 311 29.3
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.1e-27 127.1 89 68.5
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 6.4e-25 119.4 80 65.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 8.4e-25 119.0 110 54.5
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 4.2e-24 116.7 401 28.2
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.7e-09 68.2 40 77.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-08 65.5 48 58.3
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 3.0e-06 57.4 72 47.2


User provided reference genes

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