Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 3.2e-306 1054.3 542 100.0
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 4.7e-241 837.8 543 80.1
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 6.2e-241 837.4 544 79.8
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 5.4e-221 771.2 489 81.2
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 1.7e-142 510.4 565 49.9
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 3.3e-141 506.1 542 49.3
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 2.3e-139 500.0 554 49.8
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 4.9e-137 492.3 542 48.5
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 2.4e-136 490.0 553 48.3
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 5.6e-133 478.8 514 50.2
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 8.0e-132 474.9 544 49.3
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 6.8e-131 471.9 529 48.0
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 8.9e-131 471.5 511 50.1
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 1.2e-130 471.1 513 50.1
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.6e-130 469.9 530 47.5
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 9.8e-130 468.0 521 48.9
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 1.7e-129 467.2 521 48.6
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.7e-129 466.1 529 46.9
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 3.7e-129 466.1 540 48.1
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 6.0e-127 458.8 538 47.6
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.3e-126 457.6 539 47.1
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 1.9e-125 453.8 538 48.3
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.1e-123 448.0 542 47.0
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 2.3e-123 446.8 534 45.3
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 7.5e-122 441.8 541 47.1
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 6.4e-121 438.7 532 46.1
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 2.4e-120 436.8 543 44.0
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 2.4e-120 436.8 555 44.9
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 7.1e-120 435.3 533 46.9
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 9.2e-120 434.9 429 52.4
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 1.2e-119 434.5 586 43.9
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.2e-119 434.5 515 46.2
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 6.0e-119 432.2 546 44.3
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 6.0e-119 432.2 534 46.1
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 6.0e-119 432.2 593 43.3
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.3e-118 431.0 535 47.7
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 2.3e-118 430.3 530 45.7
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.0e-118 429.9 480 47.5
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 1.5e-117 427.6 506 48.0
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 1.9e-117 427.2 532 46.6
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 5.6e-117 425.6 536 47.9
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 2.1e-116 423.7 548 45.3
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 3.6e-116 422.9 548 45.8
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 2.3e-115 420.2 538 47.2
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.2e-114 417.9 534 47.2
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 2.0e-114 417.2 535 46.2
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 2.0e-114 417.2 538 43.9
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 3.4e-114 416.4 525 44.6
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 3.4e-114 416.4 534 47.0
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 4.4e-114 416.0 507 47.7
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 6.4e-113 412.1 534 46.1
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 3.2e-112 409.8 521 45.3
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 4.1e-112 409.5 534 46.1
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 9.2e-112 408.3 534 46.4
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 3.9e-110 402.9 482 47.7
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 1.1e-109 401.4 494 44.1
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 1.2e-108 397.9 429 49.9
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 2.1e-108 397.1 565 41.4
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 3.6e-108 396.4 611 39.9
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.1e-107 393.3 524 45.2
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 5.2e-107 392.5 399 53.6
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 5.8e-106 389.0 521 44.5
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 9.3e-104 381.7 510 43.7
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 1.1e-101 374.8 426 46.9
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 3.3e-101 373.2 571 39.4
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 1.6e-100 370.9 350 53.4
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.8e-99 367.5 409 46.9
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.1e-99 366.7 475 44.0
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 2.6e-98 363.6 701 34.0
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 1.7e-97 360.9 477 43.8
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.1e-96 358.2 456 44.3
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 1.4e-96 357.8 559 40.4
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 3.9e-94 349.7 437 43.9
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.5e-93 347.8 481 41.2
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.9e-93 347.4 523 39.0
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 7.4e-93 345.5 539 39.1
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 2.1e-92 344.0 432 45.1
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.8e-92 343.6 484 42.4
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 2.4e-91 340.5 384 48.7
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 4.0e-91 339.7 380 49.2
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 1.3e-89 334.7 436 45.0
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 6.4e-89 332.4 415 46.0
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 8.4e-89 332.0 559 38.5
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 3.2e-88 330.1 527 40.2
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 1.2e-87 328.2 379 47.8
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.9e-86 323.2 407 44.2
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.5e-85 321.2 393 44.0
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 5.8e-82 309.3 386 47.2
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 2.9e-81 307.0 387 43.4
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 4.2e-80 303.1 393 41.2
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.5e-77 294.7 442 38.9
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 4.8e-76 289.7 379 42.5
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 3.8e-65 253.4 284 46.1
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 3.9e-54 216.9 307 39.7
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 7.4e-53 212.6 231 50.6
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.2e-50 205.3 214 53.3
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 1.0e-49 202.2 527 29.2
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 4.0e-46 190.3 339 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 3.3e-45 187.2 538 30.7
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 4.4e-37 160.2 287 38.3
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 3.5e-34 150.6 220 39.1
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.1e-27 129.0 382 28.0
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 1.0e-25 122.5 212 32.5
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 2.9e-20 104.4 244 29.5
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 8.3e-20 102.8 206 32.5
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 9.5e-16 89.4 190 31.1
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.1e-14 85.9 161 36.6
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 9.8e-13 79.3 145 38.6
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.7e-12 78.6 112 42.0
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.7e-12 77.4 103 45.6
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 6.4e-12 76.6 112 42.0
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.3e-09 68.9 108 39.8
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 1.7e-09 68.6 91 41.8


User provided reference genes

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