Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 1.8e-119 432.6 208 100.0
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 2.3e-103 379.0 206 88.8
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.5e-102 376.3 206 87.4
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 2.2e-101 372.5 205 84.4
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 6.1e-88 327.8 205 76.1
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 2.3e-87 325.9 205 75.6
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 8.8e-87 323.9 205 75.6
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.1e-86 323.6 205 76.6
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 3.7e-85 318.5 207 76.3
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 1.4e-84 316.6 208 72.1
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 2.4e-84 315.8 204 73.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.4e-84 315.8 202 75.2
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 5.3e-84 314.7 205 72.2
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 9.1e-84 313.9 203 72.9
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.1e-84 313.9 205 72.7
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-83 313.5 206 72.3
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.6e-83 313.2 205 74.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.6e-83 312.4 205 73.2
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.5e-83 312.0 206 71.4
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 7.7e-83 310.8 205 73.7
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 7.7e-83 310.8 225 68.0
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.0e-82 310.5 205 72.2
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.3e-82 310.1 205 72.2
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 3.8e-82 308.5 205 71.2
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.0e-82 308.1 205 72.2
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 5.0e-82 308.1 207 71.0
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 6.5e-82 307.8 200 73.0
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 2.5e-81 305.8 162 90.1
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 2.5e-81 305.8 205 69.8
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.2e-81 305.4 202 72.3
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-80 303.5 205 72.2
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.2e-80 303.5 205 69.8
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.6e-80 303.1 209 69.4
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.6e-80 303.1 206 70.9
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.7e-80 302.4 203 69.5
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.7e-80 302.4 202 72.8
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.6e-80 302.0 199 72.4
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 3.6e-80 302.0 199 72.4
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 4.7e-80 301.6 208 67.8
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 6.1e-80 301.2 207 72.5
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 8.0e-80 300.8 205 68.3
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 1.8e-79 299.7 205 71.7
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.8e-79 299.7 201 70.6
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.3e-79 299.3 205 69.3
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 3.0e-79 298.9 201 71.1
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 5.2e-79 298.1 206 70.4
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 8.8e-79 297.4 199 68.3
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.3e-78 295.4 205 68.8
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 5.7e-78 294.7 209 66.0
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.7e-78 294.7 205 69.3
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 5.7e-78 294.7 205 66.8
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 7.5e-78 294.3 206 68.9
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.3e-77 293.5 199 69.3
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.3e-77 293.5 199 69.3
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 2.8e-77 292.4 192 72.4
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.8e-77 292.4 197 67.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 4.8e-77 291.6 202 65.3
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.1e-76 290.4 205 67.8
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.1e-76 290.4 204 67.2
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.4e-76 289.3 206 68.0
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.4e-76 289.3 199 68.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.1e-76 288.9 205 67.3
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.1e-76 288.5 203 67.0
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.5e-75 285.4 204 66.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 7.7e-75 284.3 207 66.7
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.7e-74 283.1 197 70.1
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 3.8e-74 282.0 204 65.2
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 3.8e-74 282.0 204 66.7
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 5.0e-74 281.6 202 64.9
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 8.5e-74 280.8 201 67.7
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 8.5e-74 280.8 193 65.3
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.9e-73 279.6 205 66.3
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 4.2e-73 278.5 196 67.3
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.5e-73 278.1 198 66.7
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 5.5e-73 278.1 208 67.3
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 9.4e-73 277.3 207 66.2
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.2e-72 276.9 201 65.7
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.2e-72 276.9 199 61.3
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.1e-72 276.2 201 64.7
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 2.7e-72 275.8 201 65.2
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 3.6e-72 275.4 198 67.2
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 3.6e-72 275.4 209 60.8
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 4.7e-72 275.0 201 65.7
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 6.1e-72 274.6 183 68.3
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 8.0e-72 274.2 194 67.5
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 8.8e-71 270.8 186 68.3
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 1.2e-70 270.4 195 66.7
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.5e-70 270.0 196 62.8
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 4.4e-70 268.5 203 62.6
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 5.7e-70 268.1 203 63.1
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 7.5e-70 267.7 199 64.8
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 9.8e-70 267.3 203 63.1
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 9.8e-70 267.3 201 61.7
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 9.8e-70 267.3 201 61.7
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 9.8e-70 267.3 277 50.9
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.7e-69 266.5 207 62.8
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 2.2e-69 266.2 204 60.8
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 2.2e-69 266.2 204 60.3
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 3.7e-69 265.4 203 61.6
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 3.7e-69 265.4 203 62.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 6.3e-69 264.6 201 62.7
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.1e-68 263.8 198 63.6
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 7.0e-68 261.2 203 59.6
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 4.5e-67 258.5 202 59.4
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 3.8e-66 255.4 187 65.8
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 6.6e-66 254.6 187 64.7
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 5.5e-65 251.5 180 68.3
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 5.5e-65 251.5 277 49.8
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.2e-64 250.4 219 60.3
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.6e-64 250.0 149 75.8
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-64 249.6 187 64.2
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 2.1e-64 249.6 187 64.2
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.4e-60 236.1 199 60.3
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.5e-59 231.9 180 62.2
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 6.6e-58 228.0 132 69.7
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 8.6e-58 227.6 206 56.8
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 8.6e-58 227.6 205 54.6
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.1e-57 227.3 199 58.3
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.5e-57 226.9 213 55.9
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.5e-57 226.9 158 68.4
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.3e-57 225.3 162 65.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.1e-56 223.0 199 57.3
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.2e-55 218.4 198 53.0
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 8.9e-55 217.6 191 55.0
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 3.4e-54 215.7 202 52.5
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 9.8e-54 214.2 211 46.9
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.2e-53 213.0 189 57.1
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 6.4e-53 211.5 143 69.9
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.7e-50 203.4 160 58.8
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.5e-49 200.3 165 61.2
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 4.3e-49 198.7 190 52.6
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 7.3e-49 198.0 199 48.2
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.1e-48 196.4 195 45.6
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 8.0e-48 194.5 185 54.1
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.1e-47 194.1 145 66.2
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.8e-47 193.4 108 73.1
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 5.2e-47 191.8 156 60.3
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.2e-46 190.7 189 54.5
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 4.4e-46 188.7 192 50.5
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 5.8e-46 188.3 174 51.7
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.4e-44 183.7 182 45.1
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.9e-44 183.3 135 68.1
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 2.1e-43 179.9 191 45.5
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 8.6e-42 174.5 204 46.6
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 8.1e-40 167.9 204 46.1
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 4.0e-39 165.6 139 59.0
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 4.0e-39 165.6 208 38.5
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 2.0e-38 163.3 199 47.2
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 2.0e-38 163.3 199 47.2
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 5.8e-38 161.8 162 54.3
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.7e-37 160.2 199 46.2
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 3.4e-30 136.0 208 38.5
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.9e-26 122.5 89 60.7
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 4.7e-24 115.5 88 58.0
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 4.0e-15 85.9 73 53.4
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 7.6e-14 81.6 152 30.3
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 9.9e-14 81.3 162 28.4
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 2.2e-13 80.1 164 36.0
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 3.8e-13 79.3 160 28.1
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 3.8e-13 79.3 158 28.5
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 1.1e-12 77.8 160 28.1
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.4e-12 77.4 163 27.0
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 3.2e-12 76.3 151 30.5
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 4.2e-12 75.9 160 28.8
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 7.1e-12 75.1 161 29.2
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 1.6e-11 73.9 158 29.7
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.0e-10 71.2 55 49.1
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 2.3e-10 70.1 39 76.9
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 6.7e-10 68.6 158 26.6
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.8e-07 60.5 92 34.8


User provided reference genes

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