Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 0.0e+00 1214.1 657 100.0
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.5e-305 1052.4 660 85.6
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.4e-295 1019.2 660 84.7
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 4.9e-293 1010.7 686 81.2
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 5.7e-233 811.2 666 67.4
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 2.5e-228 795.8 666 66.7
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 9.5e-228 793.9 663 65.0
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.1e-227 792.7 663 66.1
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.0e-226 790.4 660 66.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.7e-224 783.1 669 64.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.3e-221 772.7 666 62.3
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.0e-221 772.3 647 65.7
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 8.6e-221 770.8 663 63.8
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.9e-220 769.6 664 64.5
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.3e-220 768.5 687 63.6
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.2e-219 766.9 666 62.3
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.1e-219 766.1 668 64.5
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.8e-219 765.8 687 63.5
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 3.6e-219 765.4 687 63.3
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 4.7e-219 765.0 665 63.5
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 8.0e-219 764.2 664 64.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.9e-216 755.0 657 63.3
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 8.3e-216 754.2 657 64.4
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.1e-215 753.8 637 63.3
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.4e-215 753.4 661 63.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 5.4e-215 751.5 631 65.1
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 7.0e-215 751.1 635 63.8
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.2e-214 750.4 665 62.1
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 2.0e-214 749.6 661 62.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 6.0e-214 748.0 662 63.0
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 7.8e-214 747.7 633 64.1
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.3e-213 746.9 676 61.8
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 5.0e-213 745.0 657 63.5
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.3e-212 742.3 654 62.5
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 4.3e-212 741.9 664 61.4
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 5.6e-212 741.5 657 63.2
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 9.5e-212 740.7 659 62.1
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.2e-211 740.3 655 62.7
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.6e-211 740.0 662 61.8
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.1e-210 737.3 660 62.3
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.8e-210 736.5 664 62.8
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 3.1e-210 735.7 664 62.8
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.7e-208 729.9 654 63.3
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.2e-208 729.6 634 62.5
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 4.9e-208 728.4 579 65.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.1e-207 727.2 666 60.7
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.2e-207 725.7 679 60.5
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 9.2e-207 724.2 697 58.8
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.6e-206 723.4 682 60.3
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.0e-205 720.7 657 61.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.7e-205 719.9 679 60.4
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.3e-205 719.5 671 59.9
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.0e-205 719.2 590 64.9
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.5e-204 716.8 564 66.1
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 2.5e-204 716.1 658 60.6
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 3.3e-204 715.7 600 62.8
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 4.7e-203 711.8 656 60.7
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.4e-199 699.5 675 58.1
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.7e-198 696.0 657 60.6
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.0e-197 694.1 611 62.8
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.0e-197 692.6 641 61.9
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 6.6e-197 691.4 639 61.0
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.9e-196 689.9 639 61.0
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.3e-196 688.7 662 58.8
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 2.8e-195 686.0 661 59.8
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.7e-195 685.3 654 59.8
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 4.7e-195 685.3 663 57.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 4.7e-195 685.3 657 60.1
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 4.7e-195 685.3 662 58.0
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.5e-193 680.2 663 58.2
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 3.4e-193 679.1 630 61.0
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.4e-193 678.7 663 58.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-192 677.2 662 57.9
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.7e-192 676.8 663 59.0
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.2e-192 676.4 555 63.6
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.9e-192 676.0 599 60.9
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 6.4e-192 674.9 639 59.9
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.2e-191 672.2 678 59.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 7.1e-191 671.4 657 58.6
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.1e-190 669.8 654 58.4
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 3.5e-190 669.1 659 58.0
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.0e-189 666.0 659 57.8
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 6.6e-189 664.8 631 57.2
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.1e-188 664.1 659 58.4
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.9e-188 663.3 642 57.8
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 6.2e-187 658.3 612 61.6
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 4.5e-185 652.1 652 56.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.5e-182 642.5 683 55.1
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.5e-177 627.1 606 61.6
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.0e-177 626.7 512 65.6
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 8.4e-176 621.3 653 55.9
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.1e-173 612.1 668 55.2
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.1e-172 610.9 624 55.9
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.4e-170 603.2 607 58.6
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 2.0e-169 600.1 659 54.3
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.0e-169 600.1 662 54.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.3e-165 586.6 671 55.3
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-164 584.3 649 52.4
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.5e-164 583.9 658 53.3
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 2.5e-164 583.2 653 50.7
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.8e-149 533.9 452 66.8
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.4e-138 497.7 533 53.5
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.2e-135 486.5 570 47.0
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.7e-131 474.2 618 48.4
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.7e-123 446.4 354 68.9
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.2e-121 441.4 679 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 2.7e-121 440.3 682 41.5
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.9e-112 410.2 656 43.4
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.7e-97 360.5 549 44.1
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.5e-97 360.1 642 36.4
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.3e-96 358.2 424 54.0
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 8.6e-96 355.5 356 57.3
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.0e-92 344.4 290 63.1
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 4.1e-90 336.7 428 48.1
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.8e-86 323.9 322 54.7
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-85 322.0 251 67.3
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.4e-74 284.3 312 50.3
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.4e-61 241.9 631 29.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 9.3e-58 229.2 714 27.3
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.5e-50 204.5 246 48.8
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.2e-49 202.2 257 47.5
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 8.7e-48 196.1 152 63.2
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 2.6e-44 184.5 659 27.5
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.5e-44 183.7 165 60.6
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 2.9e-43 181.0 244 46.3
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.9e-42 178.3 244 45.9
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 4.5e-36 157.1 177 52.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 2.3e-32 144.8 99 71.7
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.1e-31 142.5 115 60.9
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.5e-31 142.1 153 50.3
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.8e-30 137.9 98 64.3
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 2.0e-28 131.7 142 47.9
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 2.5e-26 124.8 146 51.4
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.1e-25 121.7 180 43.9
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.0e-24 117.9 153 47.1
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 3.1e-21 107.8 292 29.1
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 3.6e-17 94.4 120 45.0
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 6.1e-17 93.6 83 65.1
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 1.2e-15 89.4 81 63.0
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 7.5e-15 86.7 151 42.4
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.8e-14 84.0 108 51.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.3e-14 83.6 142 35.9
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.3e-14 83.6 142 35.9
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 6.3e-14 83.6 142 35.9
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 35.2
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 35.2
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.8e-13 82.0 142 35.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.1e-13 80.9 120 41.7
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.6e-09 68.9 44 68.2
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.0e-08 64.3 45 60.0
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 8.8e-08 63.2 53 54.7
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 8.8e-08 63.2 53 54.7
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 9.8e-07 59.7 72 47.2


User provided reference genes

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