Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 1.0e-168 596.7 303 100.0
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 3.9e-152 541.6 303 90.8
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 3.9e-152 541.6 303 90.8
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 4.3e-151 538.1 303 90.4
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 1.6e-145 519.6 302 86.8
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 6.7e-144 514.2 302 85.1
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 1.5e-143 513.1 305 85.2
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 3.3e-143 511.9 301 83.4
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 1.4e-141 506.5 300 84.3
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 3.1e-141 505.4 301 84.1
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 5.3e-141 504.6 303 81.5
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 6.9e-141 504.2 302 83.8
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 6.9e-141 504.2 303 82.2
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 1.2e-140 503.4 303 81.5
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 1.5e-140 503.1 302 83.1
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 2.0e-140 502.7 303 82.8
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 2.6e-140 502.3 303 82.2
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 7.6e-140 500.7 301 82.7
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 7.6e-140 500.7 301 83.1
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 7.6e-140 500.7 301 83.1
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 1.0e-139 500.4 303 81.8
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 1.0e-139 500.4 303 81.8
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.0e-139 500.4 303 81.2
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.0e-139 500.4 303 81.2
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 1.3e-139 500.0 303 81.5
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 1.7e-139 499.6 303 81.8
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 6.5e-139 497.7 303 81.8
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 8.5e-139 497.3 301 81.1
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 2.5e-138 495.7 303 81.5
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 9.3e-138 493.8 303 82.2
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 9.3e-138 493.8 303 79.9
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 4.6e-137 491.5 300 81.3
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 4.6e-137 491.5 303 80.5
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 6.1e-137 491.1 301 82.1
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 1.8e-136 489.6 300 81.7
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.8e-136 489.6 303 80.9
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 3.0e-136 488.8 303 80.9
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 6.7e-136 487.6 299 80.3
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 8.7e-136 487.3 303 80.2
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 1.5e-135 486.5 303 80.5
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.9e-135 486.1 301 80.4
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 2.5e-135 485.7 301 79.1
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.5e-135 485.7 303 79.9
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 3.3e-135 485.3 303 79.2
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 7.4e-135 484.2 301 79.7
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 6.3e-134 481.1 301 79.4
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.1e-133 478.4 303 77.9
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 6.9e-133 477.6 299 78.3
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 9.1e-133 477.2 301 78.4
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 1.2e-132 476.9 303 78.9
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 3.4e-132 475.3 301 78.7
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 5.9e-132 474.6 301 78.4
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 1.0e-131 473.8 301 78.1
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 1.7e-131 473.0 303 77.2
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 2.9e-131 472.2 301 77.7
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 5.0e-131 471.5 301 77.1
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 4.2e-130 468.4 302 76.5
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.6e-129 464.9 295 76.6
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.8e-128 463.0 305 75.7
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 8.8e-128 460.7 303 76.2
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 8.8e-128 460.7 306 76.5
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 2.0e-127 459.5 306 76.5
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 5.7e-127 458.0 303 73.6
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 4.8e-126 454.9 303 75.9
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 4.8e-126 454.9 301 73.1
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 1.8e-125 453.0 300 74.0
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 1.8e-125 453.0 300 73.7
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 3.1e-125 452.2 305 75.4
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 4.1e-125 451.8 293 77.1
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 6.9e-125 451.1 300 73.7
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 6.9e-125 451.1 305 75.7
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 9.1e-125 450.7 300 74.0
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 2.0e-124 449.5 300 74.0
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 2.0e-124 449.5 300 73.0
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 2.6e-124 449.1 300 74.3
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 2.6e-124 449.1 300 74.3
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 4.5e-124 448.4 300 73.3
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 7.7e-124 447.6 300 74.0
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 7.7e-124 447.6 300 73.3
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 1.0e-123 447.2 300 73.7
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 1.3e-123 446.8 300 72.7
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 8.5e-123 444.1 300 74.0
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 8.5e-123 444.1 303 72.9
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 1.1e-122 443.7 303 72.9
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 2.5e-122 442.6 300 74.0
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 2.5e-122 442.6 304 72.7
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 4.7e-121 438.3 275 80.4
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 7.9e-121 437.6 287 76.7
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 3.0e-120 435.6 300 71.7
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 3.0e-120 435.6 300 71.7
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 3.0e-120 435.6 300 71.7
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 1.1e-119 433.7 300 72.0
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 5.7e-119 431.4 303 72.3
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 1.1e-117 427.2 304 70.7
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 4.1e-117 425.2 311 69.1
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 1.2e-111 407.1 249 79.5
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 1.7e-110 403.3 227 89.4
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 5.3e-109 398.3 249 79.1
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 1.5e-103 380.2 300 65.0
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 2.7e-100 369.4 299 64.9
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 7.7e-100 367.9 259 72.6
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.7e-99 366.7 230 78.7
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 2.3e-99 366.3 215 83.3
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 2.3e-99 366.3 305 61.0
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 4.2e-98 362.1 235 77.0
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 2.3e-96 356.3 249 69.5
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 5.7e-95 351.7 221 77.4
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 7.5e-95 351.3 225 75.6
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 4.1e-93 345.5 255 67.1
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 1.9e-90 336.7 219 77.2
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 8.0e-89 331.3 280 60.4
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 4.3e-82 308.9 340 51.5
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 1.3e-78 297.4 303 55.4
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 1.6e-73 280.4 173 76.3
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 1.1e-61 241.1 316 44.0
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 2.2e-46 190.3 163 60.7
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 1.1e-45 188.0 161 63.4
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 9.3e-45 184.9 343 36.4
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 1.5e-42 177.6 303 39.9
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 1.4e-40 171.0 177 50.8
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 1.5e-39 167.5 105 77.1
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 2.4e-32 143.7 89 77.5
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 8.4e-30 135.2 81 77.8
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 1.8e-27 127.5 91 69.2
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 4.3e-26 122.9 86 73.3
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 4.8e-25 119.4 74 73.0
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 5.3e-24 115.9 356 30.1
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 2.9e-22 110.2 138 48.6
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 4.6e-20 102.8 64 81.2
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 5.3e-16 89.4 67 59.7
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 1.6e-12 77.8 46 80.4


User provided reference genes

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