Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.6e-232 808.9 380 100.0
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 3.7e-208 728.0 372 89.5
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 9.1e-207 723.4 372 89.2
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.9e-206 720.7 372 89.2
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 5.5e-188 661.0 372 80.1
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 9.8e-185 650.2 374 77.5
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 3.7e-184 648.3 372 78.2
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 3.7e-184 648.3 372 78.2
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.1e-183 646.7 372 79.8
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.4e-183 646.4 376 77.4
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.1e-183 644.8 368 78.3
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 7.0e-183 644.0 374 78.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 9.2e-183 643.7 375 78.1
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 2.0e-182 642.5 376 78.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.7e-182 642.1 374 78.6
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 5.9e-182 641.0 374 78.1
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 5.9e-182 641.0 374 77.3
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 7.8e-182 640.6 374 77.3
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.3e-181 639.8 372 78.2
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.7e-181 639.4 374 77.8
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.7e-181 639.4 371 79.5
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 3.8e-181 638.3 373 75.9
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 3.8e-181 638.3 372 77.4
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 5.0e-181 637.9 382 76.2
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.5e-180 635.6 374 77.0
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.6e-180 634.4 372 76.6
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 5.6e-180 634.4 374 76.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 5.6e-180 634.4 374 77.0
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 5.6e-180 634.4 376 75.8
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.6e-179 632.9 369 75.9
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.8e-179 632.1 375 76.8
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 3.6e-179 631.7 374 75.7
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.7e-179 631.3 374 77.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 6.1e-179 630.9 374 77.3
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.4e-178 629.8 374 76.2
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.8e-178 629.4 375 76.3
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.8e-178 629.4 373 75.6
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.2e-178 627.9 382 75.7
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 8.9e-178 627.1 374 76.7
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.5e-177 626.3 372 75.3
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-177 625.9 372 75.3
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.6e-177 625.5 372 76.3
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.6e-177 625.5 372 76.6
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.4e-177 624.8 374 76.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 9.8e-177 623.6 372 75.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 9.8e-177 623.6 366 77.3
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.3e-176 623.2 374 74.3
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.9e-176 622.1 372 75.8
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 3.7e-176 621.7 374 74.6
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.7e-176 621.7 373 76.1
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 6.4e-176 620.9 374 74.1
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 6.4e-176 620.9 375 74.7
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 8.3e-176 620.5 371 75.7
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.4e-175 619.8 372 74.5
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.4e-175 619.8 372 74.2
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.4e-175 619.8 381 73.5
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.4e-175 619.0 374 75.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.2e-175 618.6 374 75.9
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 7.0e-175 617.5 372 75.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 7.0e-175 617.5 372 73.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.2e-174 616.7 371 73.9
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.6e-174 614.8 372 73.1
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 6.0e-174 614.4 372 76.1
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 7.8e-174 614.0 372 74.7
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 3.0e-173 612.1 372 72.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.0e-173 612.1 390 72.1
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 3.9e-173 611.7 372 73.4
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.5e-172 609.8 373 74.3
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.9e-172 609.4 380 73.4
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.9e-172 609.4 372 75.5
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.2e-171 606.7 372 73.9
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 8.0e-171 604.0 372 71.5
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 5.2e-170 601.3 374 71.9
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 6.8e-170 600.9 369 71.8
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 8.9e-170 600.5 374 71.4
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-169 600.1 372 72.3
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 4.4e-169 598.2 374 73.5
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 5.8e-169 597.8 372 72.3
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 3.7e-168 595.1 372 72.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 4.9e-168 594.7 372 71.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 4.9e-168 594.7 372 72.0
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.1e-167 593.6 369 71.5
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.4e-167 592.4 372 72.6
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 9.2e-167 590.5 370 71.4
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.6e-166 589.7 369 70.7
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 2.7e-166 589.0 372 73.4
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 6.0e-166 587.8 370 70.8
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 1.0e-165 587.0 373 71.6
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.9e-165 585.1 371 70.9
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 6.6e-165 584.3 427 65.1
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 8.6e-165 583.9 363 71.9
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.1e-164 583.6 375 69.9
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.5e-164 583.2 369 70.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.5e-164 583.2 357 73.1
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.3e-164 582.0 379 71.0
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.6e-163 579.7 379 69.1
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.1e-163 579.3 349 75.9
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 3.6e-163 578.6 403 65.5
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 2.3e-162 575.9 385 70.4
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.2e-161 573.5 375 72.0
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.3e-160 570.1 454 61.9
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.4e-160 567.8 408 67.2
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 2.7e-158 562.4 346 72.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.7e-157 559.7 370 68.1
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 2.3e-157 559.3 403 65.8
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 7.3e-156 554.3 370 68.4
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.8e-155 552.4 374 66.0
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 8.9e-154 547.4 374 66.0
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.2e-153 547.0 374 64.4
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 3.8e-152 542.0 372 67.7
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 4.9e-152 541.6 370 65.9
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 5.6e-148 528.1 308 77.9
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 5.6e-148 528.1 367 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.2e-147 526.9 373 63.8
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.8e-146 523.1 361 64.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.5e-145 520.0 373 61.4
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 8.1e-139 497.7 416 57.0
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.4e-138 496.9 293 74.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.3e-131 473.8 372 61.8
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.1e-130 470.7 384 58.9
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 2.5e-124 449.5 277 72.9
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 3.8e-112 409.1 385 53.5
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 2.2e-107 393.3 343 57.7
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.5e-97 359.4 217 72.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.4e-92 342.4 222 70.3
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-90 337.8 250 63.6
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 7.0e-90 335.1 382 47.4
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.0e-88 331.3 384 44.5
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 3.2e-87 326.2 402 44.3
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-86 323.6 221 67.4
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.6e-84 316.6 372 45.4
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.9e-80 303.1 212 66.0
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-73 280.4 165 72.7
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 3.3e-71 273.1 170 71.2
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 4.0e-61 239.6 171 66.1
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.7e-46 189.5 474 29.1
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 8.9e-45 185.3 94 85.1
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.9e-34 151.0 134 61.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-29 135.2 94 64.9
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 3.1e-29 133.7 94 63.8
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 5.3e-29 132.9 77 79.2
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 2.7e-25 120.6 95 61.1
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 4.3e-23 113.2 340 26.5
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 6.7e-16 89.4 163 34.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.1e-14 84.3 47 78.7
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 6.2e-14 82.8 46 78.3
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 8.1e-14 82.4 43 88.4
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 4.0e-13 80.1 46 76.1
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 4.9e-11 73.2 40 80.0
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 3.7e-06 57.0 33 75.8


User provided reference genes

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