Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 6.7e-108 394.0 200 100.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 4.1e-89 331.6 200 83.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.2e-86 322.0 200 82.0
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.5e-83 312.4 247 67.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 9.7e-75 283.9 200 68.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.9e-71 272.3 198 67.2
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 7.2e-70 267.7 200 64.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.1e-69 266.2 200 63.5
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.7e-69 265.8 199 66.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 7.9e-69 264.2 199 65.3
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.0e-68 263.8 199 65.8
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.3e-68 262.7 188 68.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-67 260.4 194 65.5
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.5e-67 260.0 200 63.5
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.5e-67 260.0 196 65.3
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.0e-67 259.6 191 67.5
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.4e-67 258.5 200 61.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 5.7e-67 258.1 199 63.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 7.4e-67 257.7 199 64.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.3e-66 256.9 196 64.8
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.8e-66 255.8 198 63.1
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.7e-66 255.4 198 63.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.8e-66 255.0 196 63.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.1e-65 253.8 200 63.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.1e-65 252.3 200 59.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.3e-65 251.5 198 61.6
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 7.0e-65 251.1 198 62.1
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 9.1e-65 250.8 198 61.6
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 9.1e-65 250.8 200 63.5
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.6e-64 250.0 192 63.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.0e-64 249.6 199 58.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.6e-64 249.2 190 63.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 3.5e-64 248.8 199 63.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.7e-64 247.7 194 63.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-63 247.3 190 63.2
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.7e-63 246.5 198 62.1
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.9e-63 245.7 192 60.9
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.9e-63 245.7 197 61.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.8e-63 245.4 192 63.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 8.5e-63 244.2 200 58.0
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 8.5e-63 244.2 194 60.8
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-62 243.8 195 62.1
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.5e-62 243.4 190 62.1
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.5e-62 242.7 193 61.7
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.2e-62 242.3 200 60.0
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.5e-62 241.5 200 60.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.2e-61 240.4 199 60.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-61 240.4 200 60.5
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.2e-61 240.4 194 60.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.6e-61 240.0 200 61.0
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.1e-61 239.6 199 56.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.6e-61 238.8 200 59.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 6.1e-61 238.0 196 59.7
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.0e-60 237.3 194 61.9
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.0e-60 235.7 196 59.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.0e-60 235.7 199 57.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 5.2e-60 235.0 200 59.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 6.7e-60 234.6 198 59.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 8.8e-60 234.2 198 57.1
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.3e-59 232.3 194 58.8
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.4e-59 231.9 198 57.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.4e-59 231.9 194 59.3
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 4.4e-59 231.9 196 57.7
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.7e-58 229.9 200 56.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.2e-58 229.6 198 58.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.2e-58 229.6 199 54.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.8e-58 229.2 199 57.8
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.7e-58 228.8 199 56.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.8e-58 228.4 196 59.2
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.8e-58 228.4 196 57.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 4.8e-58 228.4 194 59.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 8.2e-58 227.6 186 60.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.4e-57 226.9 195 56.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 200 58.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-57 226.9 192 59.4
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.8e-57 226.5 198 56.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.4e-57 226.1 197 57.4
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 4.1e-57 225.3 194 57.7
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.2e-56 223.8 194 56.7
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.5e-56 222.2 192 59.9
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.0e-55 220.7 191 55.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.3e-55 220.3 201 54.7
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.7e-55 219.9 196 56.1
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 2.9e-55 219.2 145 71.7
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 192 55.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.8e-55 218.8 193 55.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.5e-55 218.0 198 56.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.5e-55 218.0 186 58.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.5e-54 216.9 196 56.6
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.9e-54 216.5 192 58.3
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.5e-54 216.1 192 54.7
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.5e-54 216.1 185 55.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.2e-54 215.7 201 54.7
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.2e-54 215.3 200 56.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 5.5e-54 214.9 195 55.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 7.2e-54 214.5 192 54.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 9.4e-54 214.2 200 53.0
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.1e-53 211.5 186 55.4
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 8.0e-53 211.1 192 57.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.0e-52 210.7 189 55.0
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 197 51.8
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.8e-52 208.0 192 54.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.8e-52 207.6 178 59.0
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.2e-51 207.2 195 52.8
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.7e-51 204.9 195 51.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.8e-51 204.1 194 53.1
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.4e-49 200.3 194 52.6
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.4e-49 198.4 198 51.0
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 9.1e-49 197.6 198 51.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.7e-48 196.1 198 50.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.0e-47 194.1 195 49.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.0e-47 194.1 195 49.2
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.0e-47 194.1 199 50.8
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.3e-47 193.7 174 53.4
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.9e-47 192.6 165 58.8
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-46 190.7 191 49.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 191 50.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.9e-46 189.9 200 50.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 191 49.7
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 195 47.7
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-46 189.1 191 50.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-46 189.1 191 49.7
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 4.2e-46 188.7 149 61.1
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.2e-46 188.7 189 50.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.5e-46 188.3 181 53.6
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.5e-46 188.3 189 50.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 5.5e-46 188.3 191 49.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 7.2e-46 188.0 195 47.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 7.2e-46 188.0 149 61.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.2e-45 187.2 178 53.9
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-45 186.4 183 51.9
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.1e-45 186.4 190 45.8
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 4.7e-45 185.3 196 47.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-44 184.1 190 47.4
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.8e-44 183.3 190 45.8
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.3e-44 183.0 190 45.8
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.3e-44 183.0 170 55.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 6.8e-44 181.4 193 48.2
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 6.8e-44 181.4 194 48.5
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 8.9e-44 181.0 192 50.0
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.2e-43 180.6 192 50.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.0e-43 179.9 190 46.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.0e-43 179.9 165 58.2
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.4e-43 179.1 190 45.8
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 9.8e-43 177.6 192 47.4
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-42 176.8 191 49.2
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.3e-42 174.5 192 45.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.8e-41 173.3 147 58.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.5e-40 169.1 129 63.6
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.9e-39 166.0 150 54.7
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 9.5e-38 161.0 200 46.5
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-37 160.2 146 52.1
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.1e-37 159.8 193 42.5
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.1e-37 159.8 193 42.5
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 2.8e-37 159.5 126 60.3
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.8e-37 159.5 158 51.3
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-36 157.5 194 45.9
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.4e-36 157.1 194 43.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.0e-36 156.0 190 41.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.8e-35 151.0 134 57.5
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.4e-33 147.1 192 40.1
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-29 132.1 114 56.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.6e-27 126.3 198 40.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.6e-27 126.3 152 46.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.7e-21 105.5 108 52.8
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.3e-20 103.2 190 37.9
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-18 97.1 190 33.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.2e-18 96.7 198 32.3
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.4e-18 95.1 105 49.5
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.1e-14 84.3 202 27.7
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.1e-14 84.3 203 28.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-14 82.8 74 55.4
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 9.5e-14 81.3 76 52.6
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 6.2e-13 78.6 84 50.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 5.8e-11 72.0 160 33.1
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.1e-09 67.8 169 29.0
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.0e-07 59.7 95 40.0
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 6.6e-07 58.5 83 42.2


User provided reference genes

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