Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 1.2e-252 875.9 425 100.0
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.6e-228 795.8 425 90.6
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 4.0e-227 791.2 425 89.6
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 1.3e-225 786.2 453 85.2
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 1.5e-181 639.8 426 72.3
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 1.3e-180 636.7 432 71.1
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 2.1e-180 636.0 440 69.3
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 6.2e-180 634.4 436 71.3
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 8.1e-180 634.0 440 69.1
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 3.1e-179 632.1 427 71.2
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.3e-177 626.7 426 70.7
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 3.8e-177 625.2 429 71.1
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 8.4e-177 624.0 431 69.8
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.1e-176 623.6 425 70.6
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.9e-176 622.9 425 70.6
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 3.7e-172 608.6 414 69.6
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 3.1e-171 605.5 423 68.6
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 5.3e-171 604.7 425 68.2
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 9.0e-171 604.0 423 68.1
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.5e-170 603.2 428 68.5
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.6e-170 602.4 412 69.7
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 2.6e-170 602.4 423 67.8
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 3.4e-170 602.1 425 68.0
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 9.9e-170 600.5 423 67.6
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.7e-169 599.7 425 68.5
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 4.9e-169 598.2 425 68.7
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.3e-166 590.1 430 65.3
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.3e-166 589.3 426 65.3
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.0e-166 589.0 425 65.2
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 1.1e-165 587.0 485 61.0
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 1.5e-165 586.6 426 64.8
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 1.5e-165 586.6 426 64.8
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 3.3e-165 585.5 426 64.8
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 5.6e-165 584.7 438 66.4
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 7.4e-165 584.3 492 60.8
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 2.1e-164 582.8 425 65.4
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 2.8e-164 582.4 425 64.7
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 3.7e-164 582.0 425 64.0
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 4.8e-164 581.6 432 66.2
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 4.8e-164 581.6 441 64.4
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 6.2e-164 581.3 426 64.3
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 6.2e-164 581.3 426 64.3
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 6.2e-164 581.3 414 65.5
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.1e-163 580.5 421 66.7
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 4.0e-163 578.6 433 64.0
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 4.5e-162 575.1 436 65.8
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 1.7e-161 573.2 429 63.9
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 3.8e-161 572.0 434 64.3
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 3.8e-161 572.0 431 65.2
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 4.2e-160 568.5 425 64.0
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 7.1e-160 567.8 414 63.3
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 9.3e-160 567.4 427 63.7
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 2.1e-159 566.2 426 63.6
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 7.9e-159 564.3 426 63.6
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 1.8e-158 563.1 465 60.6
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.0e-158 562.4 453 63.1
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.5e-157 560.1 427 63.9
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 1.3e-156 557.0 425 63.1
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 2.8e-156 555.8 456 59.2
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 3.1e-155 552.4 425 62.8
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 1.2e-154 550.4 433 61.4
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 3.4e-154 548.9 425 60.5
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 5.9e-154 548.1 410 64.4
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 2.2e-153 546.2 425 61.9
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 1.9e-152 543.1 424 62.7
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 3.0e-150 535.8 373 68.6
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 8.8e-150 534.3 425 60.5
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 3.3e-149 532.3 430 60.2
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 7.4e-149 531.2 425 60.2
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.1e-147 527.3 425 59.8
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 5.0e-145 518.5 442 57.2
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.9e-143 511.1 415 61.0
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 3.1e-139 499.2 349 70.5
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 3.1e-139 499.2 425 56.9
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 5.3e-139 498.4 426 58.7
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 7.0e-139 498.0 425 58.1
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.7e-135 486.1 430 57.7
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 3.0e-134 482.6 426 57.7
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 3.0e-134 482.6 426 57.7
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.5e-130 469.2 430 56.5
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 6.5e-129 464.9 385 58.2
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 2.3e-126 456.4 344 62.8
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 7.5e-125 451.4 464 53.9
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.8e-121 439.1 405 51.1
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.5e-120 435.3 348 62.4
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.0e-118 429.5 334 61.7
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 4.0e-118 429.1 433 47.8
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 3.8e-105 386.0 446 43.9
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 3.4e-101 372.9 427 42.6
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 1.1e-99 367.9 491 39.7
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 9.2e-99 364.8 429 42.4
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 3.1e-86 323.2 249 61.4
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 1.5e-85 320.9 190 81.1
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 2.9e-84 316.6 206 71.4
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 2.5e-80 303.5 219 66.7
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 6.2e-79 298.9 384 41.1
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 3.4e-69 266.5 187 67.9
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 4.0e-62 243.0 183 60.1
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 9.0e-62 241.9 186 61.8
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.7e-55 219.9 159 61.6
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.3e-47 194.9 147 55.8
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 3.1e-46 190.3 166 62.7
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 1.2e-45 188.3 166 62.0
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 1.5e-45 188.0 173 59.5
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 3.4e-45 186.8 166 61.4
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 3.8e-44 183.3 152 58.6
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.5e-42 176.8 106 76.4
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 7.9e-42 175.6 128 64.1
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-40 169.5 127 70.1
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.0e-37 161.0 109 69.7
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.7e-37 159.1 114 67.5
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 8.5e-36 155.6 125 57.6
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 6.1e-34 149.4 100 69.0
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-28 131.7 86 73.3
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.7e-28 131.3 88 69.3
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 5.0e-28 129.8 75 77.3
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 6.5e-28 129.4 83 72.3
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 2.7e-26 124.0 90 66.7
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 3.0e-25 120.6 111 51.4
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.6e-24 117.5 80 58.8
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 7.0e-22 109.4 93 53.8
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 1.0e-20 105.5 61 72.1
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 1.7e-20 104.8 117 47.9
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 2.9e-20 104.0 87 55.2
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 1.1e-16 92.0 171 31.0
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.6e-13 80.9 53 66.0
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 4.5e-13 80.1 89 44.9
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 1.7e-12 78.2 84 50.0
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 2.1e-10 71.2 51 58.8
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 3.4e-08 63.9 42 64.3
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 4.4e-08 63.5 42 71.4
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 7.5e-08 62.8 42 64.3
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 4.8e-07 60.1 37 64.9
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 1.1e-06 58.9 102 35.3
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 4.1e-06 57.0 102 34.3


User provided reference genes

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