Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 7.7e-118 427.2 218 100.0
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.1e-111 406.8 218 95.0
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.1e-111 406.8 218 95.0
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.1e-111 404.8 218 94.0
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 2.0e-110 402.5 218 94.0
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 2.8e-99 365.5 219 84.0
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 2.8e-99 365.5 216 85.6
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 3.6e-99 365.2 216 84.7
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 6.2e-99 364.4 219 83.6
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 4.0e-98 361.7 219 81.7
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 6.8e-98 360.9 219 82.6
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 83.6
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.9e-98 360.5 221 83.3
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.2e-97 360.1 221 82.8
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 2.6e-97 359.0 219 82.2
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.4e-97 358.6 219 81.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 4.4e-97 358.2 220 81.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 4.4e-97 358.2 218 83.0
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 82.7
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 7.5e-97 357.5 219 82.2
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 81.2
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 2.9e-96 355.5 219 81.7
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 3.7e-96 355.1 218 82.1
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 3.7e-96 355.1 219 81.7
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.7
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.4e-95 353.2 221 80.1
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.4e-95 353.2 219 80.4
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.4e-95 353.2 221 80.1
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.9e-95 352.8 214 83.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 80.3
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 81.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.2e-95 352.1 221 80.1
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 3.2e-95 352.1 216 80.1
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.2e-95 352.1 219 79.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.2e-95 352.1 218 81.2
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 4.1e-95 351.7 221 79.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 4.1e-95 351.7 221 79.6
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 5.4e-95 351.3 219 80.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 5.4e-95 351.3 216 81.0
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 79.4
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.0
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 7.0e-95 350.9 232 79.3
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 80.9
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 79.1
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 9.2e-95 350.5 219 80.8
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 78.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 80.5
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.6e-94 349.7 221 79.6
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 2.0e-94 349.4 219 80.8
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.0e-94 349.4 217 81.1
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 79.5
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 80.9
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.7e-94 349.0 221 79.2
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 4.6e-94 348.2 216 81.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.0e-94 347.8 220 79.1
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 6.0e-94 347.8 217 80.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 78.2
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 80.0
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.0e-93 347.1 218 79.8
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 81.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.3e-93 345.9 217 79.7
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 3.0e-93 345.5 220 80.0
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.9e-93 345.1 219 81.3
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 5.0e-93 344.7 218 79.4
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 5.0e-93 344.7 220 78.2
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 5.0e-93 344.7 220 80.0
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 79.1
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 6.6e-93 344.4 217 80.6
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 6.6e-93 344.4 219 81.7
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 79.3
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 80.2
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 79.1
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 79.1
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 1.1e-92 343.6 217 80.6
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.1e-92 343.6 223 81.2
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 78.6
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 78.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 78.2
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 78.6
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 79.1
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 79.9
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 79.5
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 78.2
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 78.4
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 78.6
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 80.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 80.4
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 3.3e-92 342.0 217 78.8
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 4.3e-92 341.7 216 80.6
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 78.6
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 5.6e-92 341.3 217 78.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 5.6e-92 341.3 217 78.8
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 7.3e-92 340.9 220 78.6
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 7.3e-92 340.9 220 78.6
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.5e-92 340.5 219 79.9
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 9.5e-92 340.5 221 78.7
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.2e-91 340.1 220 77.7
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.2e-91 340.1 220 78.6
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.2e-91 340.1 220 79.1
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.2e-91 340.1 221 78.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.2e-91 340.1 221 78.7
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.6e-91 339.7 221 76.5
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.6e-91 338.6 225 78.7
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 8.1e-91 337.4 217 79.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 8.1e-91 337.4 216 79.2
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 77.7
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.3e-90 335.9 220 77.3
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 5.2e-90 334.7 211 79.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.2e-89 333.6 203 80.8
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.0e-89 332.8 218 78.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.4e-89 332.0 220 77.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 5.8e-89 331.3 220 77.7
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.3e-88 330.1 216 76.4
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.3e-88 330.1 216 76.4
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.2e-88 329.3 219 75.3
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 8.3e-88 327.4 219 77.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.6e-83 313.2 218 72.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.6e-81 305.8 183 79.8
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 2.9e-80 302.4 224 71.9
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 3.8e-80 302.0 165 86.1
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.2e-78 297.0 216 70.4
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 4.7e-75 285.0 162 82.1
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 6.9e-74 281.2 193 75.1
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 3.8e-72 275.4 222 66.2
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-71 273.9 165 80.6
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.2e-70 270.4 169 76.3
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.0e-70 268.1 202 68.8
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.6e-68 261.5 202 66.3
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.6e-67 260.0 205 65.9
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 7.1e-63 244.6 219 62.1
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 5.3e-58 228.4 218 56.9
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-55 220.7 222 57.7
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.5e-52 209.5 220 54.5
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 4.6e-46 188.7 198 53.0
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 2.3e-45 186.4 211 50.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.9e-44 183.3 150 58.0
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.5e-44 183.0 127 70.9
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 5.7e-44 181.8 138 71.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.5e-25 120.6 107 67.3
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-14 84.3 58 70.7
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.2e-14 84.3 58 70.7
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 2.7e-06 56.6 76 42.1


User provided reference genes

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