Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023004 Sechium edule HOM05D001887 ORTHO05D003756 2.8e-165 585.1 278 100.0
Sed0012793 Sechium edule HOM05D001887 ORTHO05D003756 1.3e-24 117.9 62 83.9
MELO3C013896.2 Cucumis melo HOM05D001887 ORTHO05D003756 8.0e-19 98.6 95 48.4
CsaV3_3G002250 Cucumis sativus L. HOM05D001887 ORTHO05D003756 2.3e-18 97.1 95 47.4
Sed0012330 Sechium edule HOM05D054807 ORTHO05D000501 3.1e-18 96.7 140 38.6
PGR031G0104 Punica granatum HOM05D001887 ORTHO05D003756 8.9e-18 95.1 57 68.4
RcHm_v2.0_Chr7g0205801 Rosa chinensis HOM05D001887 ORTHO05D003756 1.2e-17 94.7 95 46.3
Sed0019172 Sechium edule HOM05D001887 ORTHO05D003756 1.5e-17 94.4 62 67.7
CiPaw.12G056000 Carya illinoinensis HOM05D001887 ORTHO05D003756 2.0e-17 94.0 57 68.4
FAN13G0539 Fragaria x ananassa HOM05D001887 ORTHO05D003756 2.0e-17 94.0 95 46.3
Dinv25139 Davidia involucrata HOM05D001887 ORTHO05D003756 3.4e-17 93.2 57 66.7
Medtr5g013540 Medicago truncatula HOM05D001887 ORTHO05D003756 4.4e-17 92.8 60 66.7
Ca_24615_v3 Cicer arietinum L. HOM05D001887 ORTHO05D003756 5.8e-17 92.4 60 68.3
Prupe.5G054800 Prunus persica HOM05D001887 ORTHO05D003756 5.8e-17 92.4 57 68.4
TPR.G31434 Trifolium pratense HOM05D001887 ORTHO05D003756 7.5e-17 92.0 60 66.7
FvH4_5g20480 Fragaria vesca HOM05D001887 ORTHO05D003756 9.8e-17 91.7 57 64.9
FAN18G2460 Fragaria x ananassa HOM05D001887 ORTHO05D003756 9.8e-17 91.7 57 64.9
arahy.Tifrunner.gnm1.ann1.1W2FB9 Arachis hypogaea HOM05D001887 ORTHO05D003756 1.7e-16 90.9 60 66.7
arahy.Tifrunner.gnm1.ann1.XA2ZF2 Arachis hypogaea HOM05D001887 ORTHO05D003756 1.7e-16 90.9 60 66.7
FAN08G2877 Fragaria x ananassa HOM05D001887 ORTHO05D003756 1.7e-16 90.9 57 64.9
Sed0026554 Sechium edule HOM05D054807 ORTHO05D000501 1.7e-16 90.9 140 35.0
Thecc.03G239200 Theobroma cacao HOM05D001887 ORTHO05D003756 1.7e-16 90.9 70 57.1
ClCG10G002160 Citrullus lanatus HOM05D001887 ORTHO05D003756 2.9e-16 90.1 57 64.9
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 2.9e-16 90.1 70 57.1
MD06G1046500 Malus domestica HOM05D001887 ORTHO05D003756 2.9e-16 90.1 57 64.9
TAR636G2628 Trochodendron aralioides HOM05D001887 ORTHO05D003756 2.9e-16 90.1 57 64.9
QL12p008613 Quercus lobata HOM05D001887 ORTHO05D003756 3.7e-16 89.7 70 57.1
CSS0038249 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D003756 4.9e-16 89.4 57 64.9
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 4.9e-16 89.4 70 57.1
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 4.9e-16 89.4 57 64.9
MSTRG.27485 Avicennia marina HOM05D001887 ORTHO05D003756 6.4e-16 89.0 57 63.2
Manes.01G089800 Manihot esculenta HOM05D001887 ORTHO05D003756 6.4e-16 89.0 57 63.2
vmacro00746 Vaccinium macrocarpon HOM05D001887 ORTHO05D003756 6.4e-16 89.0 57 64.9
Gohir.A08G162600 Gossypium hirsutum HOM05D001887 ORTHO05D003756 8.3e-16 88.6 70 52.9
Gohir.D08G182600 Gossypium hirsutum HOM05D001887 ORTHO05D003756 8.3e-16 88.6 70 52.9
Nn1g00743 Nelumbo nucifera HOM05D001887 ORTHO05D003756 8.3e-16 88.6 57 66.7
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 8.3e-16 88.6 57 63.2
GSVIVG01004825001 Vitis vinifera HOM05D001887 ORTHO05D003756 8.3e-16 88.6 57 63.2
Actinidia02199 Actinidia chinensis HOM05D001887 ORTHO05D003756 1.1e-15 88.2 94 45.7
Gorai.004G191600 Gossypium raimondii HOM05D001887 ORTHO05D003756 1.1e-15 88.2 70 52.9
COL.COLO4_06684 Corchorus olitorius HOM05D001887 ORTHO05D003756 1.4e-15 87.8 70 54.3
Lalb_Chr05g0214201 Lupinus albus HOM05D001887 ORTHO05D003756 1.4e-15 87.8 60 65.0
Duzib084G0537 Durio zibethinus HOM05D001887 ORTHO05D003756 1.9e-15 87.4 70 52.9
Hma1.2p1_0840F.1_g226690 Hydrangea macrophylla HOM05D001887 ORTHO05D003756 1.9e-15 87.4 57 63.2
Potri.001G150300 Populus trichocarpa HOM05D001887 ORTHO05D003756 1.9e-15 87.4 70 55.7
SalBow4G3207 Salvia bowleyana HOM05D001887 ORTHO05D003756 1.9e-15 87.4 57 64.9
Migut.F01957 Erythranthe guttata HOM05D001887 ORTHO05D003756 2.4e-15 87.0 95 43.2
Eucgr.E00348 Eucalyptus grandis HOM05D001887 ORTHO05D003756 2.4e-15 87.0 57 59.6
Glyma.11G038700 Glycine max HOM05D001887 ORTHO05D003756 2.4e-15 87.0 60 63.3
Potri.003G083900 Populus trichocarpa HOM05D001887 ORTHO05D003756 2.4e-15 87.0 70 52.9
Actinidia25913 Actinidia chinensis HOM05D001887 ORTHO05D003756 3.2e-15 86.7 60 61.7
Phvul.002G002100 Phaseolus vulgaris HOM05D001887 ORTHO05D003756 3.2e-15 86.7 60 63.3
Glyma.01G204300 Glycine max HOM05D001887 ORTHO05D003756 4.1e-15 86.3 60 63.3
Gohir.D09G191800 Gossypium hirsutum HOM05D001887 ORTHO05D003756 4.1e-15 86.3 57 59.6
Gorai.006G214600 Gossypium raimondii HOM05D001887 ORTHO05D003756 4.1e-15 86.3 57 59.6
VMungo1215G1416 Vigna mungo HOM05D001887 ORTHO05D003756 4.1e-15 86.3 60 63.3
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 5.4e-15 85.9 92 46.7
Atru.chr9.1199 Acer truncatum HOM05D001887 ORTHO05D003756 7.0e-15 85.5 57 61.4
Psat2g175640 Pisum sativum HOM05D001887 ORTHO05D003756 7.0e-15 85.5 60 58.3
TWI15G0766 Tripterygium wilfordii HOM05D001887 ORTHO05D003756 7.0e-15 85.5 57 64.9
CANSAT21G1847 Cannabis sativa HOM05D001887 ORTHO05D003756 9.2e-15 85.1 57 59.6
CiPaw.14G018400 Carya illinoinensis HOM05D001887 ORTHO05D003756 9.2e-15 85.1 57 59.6
Peaxi162Scf00301g00621 Petunia axillaris HOM05D001887 ORTHO05D003756 9.2e-15 85.1 57 57.9
PGSC0003DMG400026213 Solanum tuberosum HOM05D001887 ORTHO05D003756 9.2e-15 85.1 57 56.1
PGR042G3895 Punica granatum HOM05D001887 ORTHO05D003756 1.2e-14 84.7 70 54.3
Hund14476 Selenicereus undatus HOM05D001887 ORTHO05D003756 1.2e-14 84.7 57 59.6
SGA_v2.0_scaffold13G06381 Striga asiatica HOM05D001887 ORTHO05D003756 1.2e-14 84.7 62 59.7
AT4G17070 Arabidopsis thaliana HOM05D001887 ORTHO05D003756 1.6e-14 84.3 57 59.6
Carub.0007s2433 Capsella rubella HOM05D001887 ORTHO05D003756 1.6e-14 84.3 57 59.6
Lalb_Chr09g0324121 Lupinus albus HOM05D001887 ORTHO05D003756 1.6e-14 84.3 176 35.8
Cc08_g11220 Coffea canephora HOM05D001887 ORTHO05D003756 2.0e-14 84.0 57 56.1
ECA246G3991 Erigeron canadensis HOM05D001887 ORTHO05D003756 2.0e-14 84.0 57 59.6
THA.LOC104812738 Tarenaya hassleriana HOM05D001887 ORTHO05D003756 2.0e-14 84.0 57 61.4
MSTRG.9151 Avicennia marina HOM05D001887 ORTHO05D003756 2.7e-14 83.6 68 55.9
Gohir.A09G197200 Gossypium hirsutum HOM05D001887 ORTHO05D003756 2.7e-14 83.6 57 57.9
MD07G1097200 Malus domestica HOM05D001887 ORTHO05D003756 2.7e-14 83.6 57 57.9
AL7G37640 Arabidopsis lyrata HOM05D001887 ORTHO05D003756 3.5e-14 83.2 57 59.6
Lj2g0000600 Lotus japonicus HOM05D001887 ORTHO05D003756 3.5e-14 83.2 60 60.0
Oeu040671.1 Olea europaea HOM05D001887 ORTHO05D003756 3.5e-14 83.2 57 59.6
Aqoxy7G00854 Aquilegia oxysepala HOM05D001887 ORTHO05D003756 4.6e-14 82.8 57 57.9
Lj8A278T25 Lonicera japonica HOM05D001887 ORTHO05D003756 4.6e-14 82.8 57 63.2
Lj9A553T47 Lonicera japonica HOM05D001887 ORTHO05D003756 4.6e-14 82.8 57 57.9
QL04p028582 Quercus lobata HOM05D001887 ORTHO05D003756 6.0e-14 82.4 57 56.1
Sabra02G0108700 Salix brachista HOM05D001887 ORTHO05D003756 6.0e-14 82.4 66 53.0
Sc01g0007950 Simmondsia chinensis HOM05D001887 ORTHO05D003756 6.0e-14 82.4 57 57.9
Solyc08g077790.3 Solanum lycopersicum HOM05D001887 ORTHO05D003756 6.0e-14 82.4 57 54.4
Sopen08g026300 Solanum pennellii HOM05D001887 ORTHO05D003756 6.0e-14 82.4 57 54.4
unitig_46.g18602 Utricularia gibba HOM05D001887 ORTHO05D003756 6.0e-14 82.4 57 57.9
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 7.8e-14 82.0 57 59.6
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 7.8e-14 82.0 57 59.6
BolC1t02490H Brassica oleracea HOM05D001887 ORTHO05D003756 7.8e-14 82.0 57 59.6
Duzib205G1673 Durio zibethinus HOM05D001887 ORTHO05D003756 7.8e-14 82.0 57 61.4
Sabra01G0120100 Salix brachista HOM05D001887 ORTHO05D003756 1.0e-13 81.6 70 51.4
BcaB04g18384 Brassica carinata HOM05D001887 ORTHO05D003756 1.3e-13 81.3 57 59.6
BcaC07g38035 Brassica carinata HOM05D001887 ORTHO05D003756 1.3e-13 81.3 57 59.6
BcaNung00127 Brassica carinata HOM05D001887 ORTHO05D003756 1.3e-13 81.3 57 59.6
BolC8t48429H Brassica oleracea HOM05D001887 ORTHO05D003756 1.3e-13 81.3 57 59.6
arahy.Tifrunner.gnm1.ann1.RES91D Arachis hypogaea HOM05D001887 ORTHO05D003756 1.7e-13 80.9 60 56.7
Thecc.01G400200 Theobroma cacao HOM05D001887 ORTHO05D003756 1.7e-13 80.9 57 57.9
Aa31LG2G13180 Aethionema arabicum HOM05D001887 ORTHO05D003756 2.3e-13 80.5 57 57.9
BcaB04g18387 Brassica carinata HOM05D001887 ORTHO05D003756 2.3e-13 80.5 57 57.9
A08p12850 Brassica napus HOM05D001887 ORTHO05D003756 2.3e-13 80.5 58 60.3
BraA08t33269Z Brassica rapa HOM05D001887 ORTHO05D003756 2.3e-13 80.5 58 60.3
Thhalv10025645m.g Eutrema salsugineum HOM05D001887 ORTHO05D003756 2.3e-13 80.5 57 57.9
Potri.014G051300 Populus trichocarpa HOM05D001887 ORTHO05D003756 2.3e-13 80.5 57 57.9
Sp7g17110 Schrenkiella parvula HOM05D001887 ORTHO05D003756 2.3e-13 80.5 57 57.9
MBI04_g38562_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D003756 3.0e-13 80.1 67 53.7
Potri.002G139600 Populus trichocarpa HOM05D001887 ORTHO05D003756 3.0e-13 80.1 67 55.2
HPP92_025743 Vanilla planifolia HOM05D001887 ORTHO05D003756 3.0e-13 80.1 57 57.9
CAN.G572.15 Capsicum annuum HOM05D001887 ORTHO05D003756 3.9e-13 79.7 57 56.1
Nitab4.5_0004227g0020 Nicotiana tabacum HOM05D001887 ORTHO05D003756 3.9e-13 79.7 57 54.4
AUR62007172 Chenopodium quinoa HOM05D001887 ORTHO05D003756 5.0e-13 79.3 57 56.1
COL.COLO4_12375 Corchorus olitorius HOM05D001887 ORTHO05D003756 5.0e-13 79.3 57 57.9
Nitab4.5_0003335g0040 Nicotiana tabacum HOM05D001887 ORTHO05D003756 5.0e-13 79.3 57 54.4
Gorai.007G085200 Gossypium raimondii HOM05D001887 ORTHO05D003756 6.6e-13 79.0 57 57.9
Zm00001eb404550 Zea mays HOM05D001887 ORTHO05D003756 8.6e-13 78.6 67 50.7
Gohir.A11G074800 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.1e-12 78.2 57 57.9
Nn6g33751 Nelumbo nucifera HOM05D001887 ORTHO05D003756 1.1e-12 78.2 67 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5648 Anthoceros agrestis HOM05D001887 ORTHO05D003756 1.5e-12 77.8 62 48.4
arahy.Tifrunner.gnm1.ann1.4V75MI Arachis hypogaea HOM05D001887 ORTHO05D003756 1.9e-12 77.4 70 50.0
Duzib138G1052 Durio zibethinus HOM05D001887 ORTHO05D003756 1.9e-12 77.4 57 54.4
HanXRQChr17g0535581 Helianthus annuus HOM05D001887 ORTHO05D003756 1.9e-12 77.4 57 52.6
GSVIVG01018309001 Vitis vinifera HOM05D001887 ORTHO05D003756 1.9e-12 77.4 57 52.6
arahy.Tifrunner.gnm1.ann1.5JK48S Arachis hypogaea HOM05D001887 ORTHO05D003756 2.5e-12 77.0 57 56.1
Prupe.2G121100 Prunus persica HOM05D001887 ORTHO05D003756 2.5e-12 77.0 57 54.4
Oeu062966.1 Olea europaea HOM05D001887 ORTHO05D003756 3.3e-12 76.6 57 54.4
Lsat_1_v5_gn_3_15401 Lactuca sativa HOM05D001887 ORTHO05D003756 4.3e-12 76.3 57 52.6
Rhsim11G0061800 Rhododendron simsii HOM05D001887 ORTHO05D003756 4.3e-12 76.3 80 46.2
Rhsim11G0063300 Rhododendron simsii HOM05D001887 ORTHO05D003756 4.3e-12 76.3 80 46.2
TPR.G25980 Trifolium pratense HOM05D001887 ORTHO05D003756 4.3e-12 76.3 57 52.6
TWI59G0877 Tripterygium wilfordii HOM05D001887 ORTHO05D003756 4.3e-12 76.3 57 57.9
ATR0665G190 Amborella trichopoda HOM05D001887 ORTHO05D003756 5.6e-12 75.9 59 54.2
Ciclev10023925m.g Citrus clementina HOM05D001887 ORTHO05D003756 5.6e-12 75.9 57 59.6
RcHm_v2.0_Chr1g0345271 Rosa chinensis HOM05D001887 ORTHO05D003756 7.3e-12 75.5 57 52.6
ClCG05G003040 Citrullus lanatus HOM05D001887 ORTHO05D003756 9.5e-12 75.1 57 52.6
CsaV3_3G010660 Cucumis sativus L. HOM05D001887 ORTHO05D003756 9.5e-12 75.1 57 52.6
Glyma.18G248100 Glycine max HOM05D001887 ORTHO05D003756 1.2e-11 74.7 57 49.1
Medtr7g081200 Medicago truncatula HOM05D001887 ORTHO05D003756 1.2e-11 74.7 57 52.6
Os03g0100300 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D003756 1.6e-11 74.3 57 49.1
Atru.chr5.99 Acer truncatum HOM05D001887 ORTHO05D003756 2.1e-11 73.9 57 56.1
Lalb_Chr01g0021681 Lupinus albus HOM05D001887 ORTHO05D003756 2.1e-11 73.9 57 52.6
MD07G1096900 Malus domestica HOM05D001887 ORTHO05D003756 2.1e-11 73.9 100 37.0
SHI07802 Sapria himalayana HOM05D001887 ORTHO05D003756 2.1e-11 73.9 57 50.9
MELO3C006285.2 Cucumis melo HOM05D001887 ORTHO05D003756 8.0e-11 72.0 57 50.9
PSO063G1476 Papaver somniferum HOM05D001887 ORTHO05D003756 8.0e-11 72.0 57 50.9
Ca_08045_v3 Cicer arietinum L. HOM05D001887 ORTHO05D003756 1.1e-10 71.6 57 50.9
Lj1g0018104 Lotus japonicus HOM05D001887 ORTHO05D003756 1.4e-10 71.2 57 49.1
Mapoly0034s0116 Marchantia polymorpha HOM05D001887 ORTHO05D003756 1.8e-10 70.9 57 54.4
Oeu017206.1 Olea europaea HOM05D001887 ORTHO05D003756 2.3e-10 70.5 48 62.5
SEGI_20203 Sequoiadendron giganteum HOM05D001887 ORTHO05D003756 2.3e-10 70.5 57 49.1
FvH4_7g09211 Fragaria vesca HOM05D001887 ORTHO05D003756 3.1e-10 70.1 57 49.1
Phvul.008G049200 Phaseolus vulgaris HOM05D001887 ORTHO05D003756 3.1e-10 70.1 57 45.6
Psat3g099640 Pisum sativum HOM05D001887 ORTHO05D003756 3.1e-10 70.1 73 45.2
VMungo1383G1774 Vigna mungo HOM05D001887 ORTHO05D003756 4.0e-10 69.7 57 47.4
CDE12G0256 Ceratophyllum demersum HOM05D001887 ORTHO05D003756 6.8e-10 68.9 72 44.4
Glyma.09G245200 Glycine max HOM05D001887 ORTHO05D003756 2.0e-09 67.4 57 43.9
Glyma.17G148700 Glycine max HOM05D001887 ORTHO05D003756 3.4e-09 66.6 53 58.5
CANSAT25G0255 Cannabis sativa HOM05D001887 ORTHO05D003756 5.8e-09 65.9 57 45.6
FAN03G2304 Fragaria x ananassa HOM05D001887 ORTHO05D003756 7.5e-09 65.5 60 46.7
Pp3c15_10740 Physcomitrium patens HOM05D001887 ORTHO05D003756 1.3e-08 64.7 73 38.4
Sed0021992 Sechium edule HOM05D001887 ORTHO05D003756 3.7e-08 63.2 57 45.6
HanXRQChr01g0015991 Helianthus annuus HOM05D001887 ORTHO05D003756 8.3e-08 62.0 80 37.5
Dinv43603 Davidia involucrata HOM05D001887 ORTHO05D003756 1.4e-07 61.2 46 54.3
Hund11502 Selenicereus undatus HOM05D001887 ORTHO05D003756 1.9e-07 60.8 48 54.2
Pp3c9_3160 Physcomitrium patens HOM05D001887 ORTHO05D003756 3.2e-07 60.1 85 35.3
SMO141G0008 Selaginella moellendorffii HOM05D001887 ORTHO05D003756 3.2e-07 60.1 57 42.1
Gohir.D11G079500 Gossypium hirsutum HOM05D001887 ORTHO05D003756 7.1e-07 58.9 49 51.0
Manes.01G273400 Manihot esculenta HOM05D001887 ORTHO05D003756 7.1e-07 58.9 48 47.9
AUR62018832 Chenopodium quinoa HOM05D001887 ORTHO05D003756 6.0e-06 55.8 117 29.9
Dinv07465 Davidia involucrata HOM05D001887 ORTHO05D003756 6.0e-06 55.8 55 49.1
Lalb_Chr19g0126401 Lupinus albus HOM05D001887 ORTHO05D003756 6.0e-06 55.8 49 44.9


User provided reference genes

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