Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 3.2e-220 768.1 373 100.0
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.5e-201 706.1 371 91.6
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 3.4e-198 694.9 380 88.7
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 1.1e-196 689.9 363 90.6
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 3.5e-187 658.3 359 86.9
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 3.3e-185 651.7 358 85.5
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 9.6e-185 650.2 357 86.3
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 9.6e-185 650.2 357 86.3
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 1.6e-184 649.4 362 85.4
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 6.2e-184 647.5 360 84.2
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 6.2e-184 647.5 354 85.6
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.1e-183 646.7 361 84.8
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.1e-183 646.7 356 85.4
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 1.4e-183 646.4 353 86.4
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 3.1e-183 645.2 357 84.6
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 3.1e-183 645.2 359 85.0
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 5.3e-183 644.4 359 85.2
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 5.3e-183 644.4 358 85.2
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 6.9e-183 644.0 362 84.5
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 6.9e-183 644.0 362 84.5
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 6.9e-183 644.0 360 85.8
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 6.9e-183 644.0 356 85.4
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 2.0e-182 642.5 360 82.5
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 5.8e-182 641.0 362 84.0
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 9.9e-182 640.2 361 83.7
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 2.9e-181 638.6 361 82.8
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 3.8e-181 638.3 361 83.7
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 3.8e-181 638.3 366 82.5
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 4.9e-181 637.9 356 84.6
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 6.4e-181 637.5 363 83.7
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 6.4e-181 637.5 356 84.8
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 6.4e-181 637.5 356 84.3
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 1.1e-180 636.7 355 83.7
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.4e-180 636.3 363 82.6
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 1.4e-180 636.3 362 82.9
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.4e-180 636.3 360 83.1
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.9e-180 636.0 360 83.3
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 1.9e-180 636.0 357 83.8
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 2.4e-180 635.6 355 84.8
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.2e-180 634.8 364 80.8
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 4.2e-180 634.8 361 83.4
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 5.5e-180 634.4 357 83.8
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 5.5e-180 634.4 355 83.1
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 7.1e-180 634.0 359 83.6
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 1.6e-179 632.9 361 83.7
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 1.6e-179 632.9 356 83.7
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.7e-179 632.1 353 84.1
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 2.7e-179 632.1 357 83.5
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 4.6e-179 631.3 385 79.0
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 4.6e-179 631.3 357 84.0
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 2.3e-178 629.0 360 82.8
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 2.3e-178 629.0 358 82.7
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 3.9e-178 628.2 376 80.3
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 3.9e-178 628.2 361 82.5
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 5.1e-178 627.9 360 81.4
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 6.7e-178 627.5 353 84.7
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 1.1e-177 626.7 358 81.8
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.5e-177 626.3 356 83.4
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.5e-177 625.5 356 83.4
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.5e-177 625.5 357 82.9
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 4.3e-177 624.8 355 82.3
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 2.1e-176 622.5 353 82.2
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 2.8e-176 622.1 361 82.5
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 8.2e-176 620.5 363 78.8
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 1.1e-175 620.2 357 80.4
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 2.4e-175 619.0 354 82.5
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 1.5e-174 616.3 355 80.6
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.0e-174 615.9 356 82.9
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 2.6e-174 615.5 362 79.8
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 5.8e-174 614.4 358 79.9
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 1.3e-173 613.2 369 79.1
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 2.2e-173 612.5 360 78.6
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 2.9e-173 612.1 358 79.6
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 3.8e-173 611.7 360 80.8
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 6.5e-173 610.9 360 78.9
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 1.1e-172 610.1 361 80.3
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 1.1e-172 610.1 367 77.7
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 1.4e-172 609.8 361 80.3
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 1.4e-172 609.8 360 80.0
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 3.2e-172 608.6 364 78.8
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 5.5e-172 607.8 359 80.8
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 9.3e-172 607.1 365 77.8
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 1.2e-171 606.7 351 79.2
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.0e-170 603.6 358 78.5
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 5.1e-170 601.3 358 77.7
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 5.1e-170 601.3 362 75.1
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 8.7e-170 600.5 353 78.2
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.5e-169 599.7 361 78.4
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 3.3e-169 598.6 372 76.1
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 5.7e-169 597.8 368 78.8
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 5.7e-169 597.8 375 74.4
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 1.3e-168 596.7 380 74.2
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.3e-168 594.3 370 76.8
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 1.8e-167 592.8 375 76.0
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 9.0e-167 590.5 359 76.6
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 1.2e-166 590.1 356 80.6
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 1.2e-166 590.1 342 79.2
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 2.6e-166 589.0 369 76.4
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 2.9e-165 585.5 374 75.4
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 1.1e-164 583.6 354 78.2
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 1.6e-163 579.7 360 77.5
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 7.9e-163 577.4 357 78.4
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 8.7e-162 573.9 365 73.4
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 1.1e-161 573.5 365 72.9
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 2.5e-161 572.4 357 76.5
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.5e-161 572.4 353 76.8
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 5.7e-161 571.2 358 74.9
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 6.3e-160 567.8 372 74.5
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.2e-158 563.5 361 73.1
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.3e-157 560.1 368 76.9
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.4e-156 556.6 351 73.5
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 7.2e-156 554.3 356 75.8
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.2e-156 554.3 362 72.9
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 3.6e-155 552.0 364 72.3
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 3.6e-155 552.0 343 75.5
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.7e-153 544.7 358 73.2
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.3e-152 541.2 358 72.1
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 6.3e-152 541.2 369 68.6
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 3.1e-151 538.9 298 84.9
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 5.3e-151 538.1 353 70.5
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 4.5e-150 535.0 381 67.5
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 5.9e-150 534.6 343 72.0
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 1.3e-149 533.5 346 70.5
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.5e-148 529.3 427 63.7
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 5.5e-148 528.1 361 70.4
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 3.6e-147 525.4 367 71.1
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.7e-141 506.5 277 85.6
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.5e-140 503.4 363 65.8
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 1.7e-136 490.0 353 65.2
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.4e-135 486.1 290 77.9
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 5.0e-133 478.4 353 63.7
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 4.4e-129 465.3 267 85.0
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 8.3e-128 461.1 357 64.4
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 1.6e-126 456.8 716 39.1
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 1.0e-125 454.1 240 87.9
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.3e-125 453.8 310 67.1
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.3e-125 453.8 341 59.8
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 7.0e-111 404.8 348 55.5
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 4.0e-106 389.0 241 76.3
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 2.7e-102 376.3 336 58.3
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 8.3e-96 354.8 365 52.3
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 3.3e-92 342.8 215 72.6
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 1.6e-91 340.5 251 60.6
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 4.4e-81 305.8 202 71.8
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 4.2e-79 299.3 291 55.7
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 1.4e-50 204.5 142 70.4
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.6e-46 191.0 121 79.3
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 2.7e-46 190.3 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 8.8e-45 185.3 171 55.0
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 3.3e-44 183.3 126 71.4
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 4.3e-44 183.0 135 70.4
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 4.3e-44 183.0 112 77.7
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 9.7e-44 181.8 123 73.2
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 4.1e-42 176.4 98 87.8
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 3.4e-41 173.3 125 68.0
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 2.7e-38 163.7 128 64.1
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.0e-34 149.1 98 68.4
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 7.7e-33 145.6 126 59.5
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.9e-31 141.0 111 61.3
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 5.9e-25 119.4 74 77.0
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 5.0e-24 116.3 69 78.3
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 1.9e-23 114.4 67 82.1
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 2.7e-22 110.5 67 79.1
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 3.7e-19 100.1 61 77.0
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 7.0e-18 95.9 66 63.6
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 2.9e-16 90.5 84 56.0
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.5e-15 87.4 127 44.9
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 6.8e-13 79.3 49 71.4
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 1.3e-11 75.1 62 54.8
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 2.3e-08 64.3 46 63.0
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 1.9e-07 61.2 34 85.3


User provided reference genes

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