Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 6.2e-296 1020.0 502 100.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 4.3e-273 944.1 510 91.4
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 8.2e-272 939.9 510 90.4
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.8e-232 807.7 512 80.5
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.3e-229 798.9 511 80.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.9e-229 798.5 511 80.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.5e-229 797.3 511 79.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-228 796.2 511 79.8
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.5e-228 795.4 511 79.3
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-228 794.7 511 79.5
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.2e-228 793.9 511 77.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.8e-227 792.0 500 79.0
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.0e-226 790.0 505 78.8
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 3.0e-226 788.5 500 79.2
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.0e-226 788.5 512 78.5
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 4.0e-226 788.1 501 79.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.4e-225 785.0 515 78.1
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.3e-224 783.1 507 78.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.8e-224 781.9 508 78.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.3e-224 780.4 506 77.5
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.4e-223 778.9 510 76.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.2e-222 776.5 506 77.9
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.7e-222 775.4 500 78.2
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.7e-221 772.7 506 78.1
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 4.3e-220 768.1 534 73.8
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 2.3e-218 762.3 487 78.4
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.5e-217 759.6 508 76.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.5e-217 759.6 507 76.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 4.4e-217 758.1 505 74.5
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.8e-217 756.9 503 75.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.9e-216 755.4 515 75.0
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.7e-216 755.0 508 75.6
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.1e-215 753.4 515 74.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.4e-215 753.1 507 75.7
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.0e-215 750.7 510 74.9
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.6e-214 749.6 523 74.6
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.9e-214 747.7 539 72.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.0e-213 745.3 511 75.7
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 6.6e-213 744.2 480 77.9
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 8.6e-213 743.8 515 74.2
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 5.6e-212 741.1 507 73.8
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.6e-211 739.6 509 74.1
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.8e-211 738.8 526 73.4
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.6e-211 738.4 499 74.7
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 4.7e-211 738.0 510 74.3
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 8.0e-211 737.3 508 73.8
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 5.2e-210 734.6 514 72.6
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.8e-210 734.2 516 73.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 8.9e-210 733.8 508 73.6
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.0e-209 732.6 499 74.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.2e-208 729.2 489 76.5
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.2e-208 729.2 507 73.8
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.1e-207 726.9 508 73.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.1e-207 726.9 496 75.2
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 3.2e-207 725.3 458 79.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 5.4e-207 724.5 507 73.4
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 9.2e-207 723.8 496 75.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.2e-207 723.8 507 73.2
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.3e-205 719.9 467 78.6
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-205 719.9 486 74.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 5.0e-205 718.0 518 72.0
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.5e-204 716.5 546 68.1
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.2e-203 713.4 498 73.1
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.2e-203 713.4 499 72.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 2.1e-203 712.6 506 73.7
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-202 710.3 508 71.1
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.4e-202 709.9 496 72.4
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 6.8e-202 707.6 501 71.5
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 2.0e-201 706.1 498 72.1
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.8e-201 704.5 542 68.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.9e-199 699.5 522 69.5
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.9e-199 699.5 509 71.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.1e-198 696.0 501 70.1
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 4.6e-198 694.9 493 71.2
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 6.0e-198 694.5 508 70.1
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 6.0e-198 694.5 508 70.1
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.9e-197 691.8 500 70.4
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 3.3e-196 688.7 522 68.4
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.1e-195 686.0 482 72.4
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 2.8e-195 685.6 522 69.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 3.6e-195 685.3 516 68.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.4e-194 683.3 488 73.4
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.7e-192 676.4 588 63.3
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.1e-191 673.7 495 69.9
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.0e-190 667.9 503 66.8
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 7.8e-190 667.5 426 78.9
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.6e-187 659.8 502 66.9
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.5e-185 653.3 515 66.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 5.8e-185 651.4 502 70.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 9.9e-185 650.6 490 68.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.7e-184 649.8 490 68.4
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.9e-184 649.0 518 66.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.1e-183 647.1 355 91.5
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.0e-181 639.0 523 64.1
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.3e-179 633.6 507 66.5
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.3e-178 628.2 417 78.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.9e-173 612.1 525 62.7
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.0e-170 602.1 474 66.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.3e-168 597.0 519 61.5
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 3.3e-164 582.4 429 69.7
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.3e-163 580.5 483 61.9
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.3e-162 575.1 487 62.0
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.5e-159 565.1 478 62.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.1e-159 564.7 478 61.7
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 4.3e-156 555.4 369 76.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.6e-155 553.5 540 54.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.8e-152 542.3 458 64.0
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 6.1e-150 535.0 341 78.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.1e-150 535.0 492 56.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.4e-149 533.9 360 77.8
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 5.7e-148 528.5 360 76.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-146 524.2 477 58.5
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.4e-146 523.1 392 69.9
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 3.4e-145 519.2 482 56.4
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.6e-142 509.2 360 72.8
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 4.4e-140 502.3 535 51.2
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 8.2e-139 498.0 292 82.2
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.2e-136 490.0 491 54.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 3.9e-133 479.2 492 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.4e-130 469.9 514 48.4
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.0e-125 454.5 415 60.2
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 8.8e-125 451.4 337 70.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.5e-124 448.4 356 67.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 5.0e-112 409.1 457 48.4
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-108 397.5 472 50.8
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.7e-102 375.9 313 64.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.0e-100 370.5 377 56.8
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.4e-82 311.2 229 69.0
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.8e-81 305.4 164 86.6
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.9e-80 303.1 311 57.2
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.6e-80 302.4 286 59.1
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.8e-76 289.3 246 61.8
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.1e-73 280.8 219 64.8
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.5e-71 274.6 395 40.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.9e-66 257.7 145 83.4
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.3e-64 251.5 148 82.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.3e-61 239.6 150 76.7
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 3.5e-57 226.9 308 42.5
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.9e-55 221.1 229 55.5
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.4e-53 214.9 326 40.5
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.5e-44 184.9 165 57.6
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.1e-39 168.7 100 76.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-36 157.5 115 65.2
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.7e-28 129.4 198 44.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.8e-27 127.1 117 62.4
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.9e-25 119.4 369 27.1
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-24 118.6 68 79.4
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.0e-19 102.4 58 79.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 5.2e-16 90.1 61 73.8
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.7e-14 84.0 88 54.5
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 9.1e-13 79.3 60 65.0
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 6.1e-09 66.6 38 76.3
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.3e-08 64.7 35 80.0
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.0e-08 64.3 46 58.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 9.7e-07 59.3 87 44.8
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.7e-06 57.4 37 62.2


User provided reference genes

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