Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 7.1e-29 129.8 61 100.0
ClCG04G009250 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.6e-12 75.5 54 70.4
CsaV3_6G039840 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.4e-11 72.4 68 57.4
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 1.8e-11 72.0 45 66.7
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 2.3e-11 71.6 53 64.2
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 3.9e-11 70.9 62 59.7
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 6.7e-11 70.1 43 69.8
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 1.1e-10 69.3 52 63.5
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 1.5e-10 68.9 35 82.9
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 3.3e-10 67.8 35 80.0
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 7.4e-10 66.6 37 75.7
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 7.4e-10 66.6 35 77.1
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 9.7e-10 66.2 35 77.1
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 9.7e-10 66.2 35 77.1
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.7e-10 66.2 37 75.7
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 9.7e-10 66.2 37 75.7
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 1.7e-09 65.5 35 77.1
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.7e-09 65.5 44 70.5
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.2e-09 65.1 43 67.4
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 2.2e-09 65.1 56 53.6
Sed0009419 Sechium edule HOM05D001415 ORTHO05D001075 2.2e-09 65.1 50 66.0
Ah.08g211680 Amaranthus hybridus HOM05D001415 ORTHO05D001075 2.8e-09 64.7 41 68.3
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 3.7e-09 64.3 35 77.1
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.7e-09 64.3 63 52.4
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 4.8e-09 63.9 49 61.2
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 4.8e-09 63.9 58 50.0
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 4.8e-09 63.9 33 81.8
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 4.8e-09 63.9 32 84.4
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 8.2e-09 63.2 48 62.5
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 8.2e-09 63.2 49 65.3
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.2e-09 63.2 37 73.0
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 8.2e-09 63.2 33 78.8
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 8.2e-09 63.2 38 68.4
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.1e-08 62.8 61 49.2
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 1.1e-08 62.8 32 84.4
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-08 62.8 33 78.8
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 1.1e-08 62.8 38 68.4
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.4e-08 62.4 61 47.5
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.4e-08 62.4 49 57.1
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 1.8e-08 62.0 39 69.2
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 1.8e-08 62.0 49 63.3
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-08 62.0 49 63.3
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-08 62.0 49 63.3
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 1.8e-08 62.0 35 68.6
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.4e-08 61.6 33 75.8
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 3.1e-08 61.2 35 71.4
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 3.1e-08 61.2 45 60.0
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 3.1e-08 61.2 36 66.7
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 4.1e-08 60.8 33 72.7
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.1e-08 60.8 55 54.5
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 4.1e-08 60.8 45 60.0
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 5.3e-08 60.5 39 66.7
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 5.3e-08 60.5 49 61.2
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 5.3e-08 60.5 47 61.7
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 5.3e-08 60.5 39 66.7
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 5.3e-08 60.5 48 62.5
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.3e-08 60.5 54 55.6
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 6.9e-08 60.1 51 58.8
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.9e-08 60.1 49 55.1
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.9e-08 60.1 49 55.1
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 9.1e-08 59.7 47 59.6
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 9.1e-08 59.7 47 59.6
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 9.1e-08 59.7 52 55.8
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 9.1e-08 59.7 52 51.9
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 9.1e-08 59.7 35 71.4
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.2e-07 59.3 32 71.9
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-07 59.3 47 59.6
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-07 59.3 47 59.6
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-07 59.3 47 59.6
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.2e-07 59.3 33 75.8
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 1.2e-07 59.3 61 49.2
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 1.5e-07 58.9 39 64.1
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-07 58.9 32 78.1
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-07 58.9 32 78.1
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.5e-07 58.9 32 78.1
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 1.5e-07 58.9 41 58.5
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 2.0e-07 58.5 57 52.6
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.6e-07 58.2 29 82.8
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.6e-07 58.2 29 82.8
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.6e-07 58.2 29 82.8
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 2.6e-07 58.2 35 62.9
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 2.6e-07 58.2 50 52.0
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 3.4e-07 57.8 53 50.9
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.4e-07 57.8 54 48.1
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 5.9e-07 57.0 32 71.9
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 5.9e-07 57.0 32 71.9
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 5.9e-07 57.0 48 56.2
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 5.9e-07 57.0 32 71.9
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 5.9e-07 57.0 48 56.2
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 5.9e-07 57.0 32 71.9
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 5.9e-07 57.0 48 56.2
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.9e-07 57.0 61 47.5
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.9e-07 57.0 61 47.5
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.9e-07 57.0 61 47.5
Lsat_1_v5_gn_2_106661 Lactuca sativa HOM05D001415 ORTHO05D001075 5.9e-07 57.0 45 57.8
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 5.9e-07 57.0 49 53.1
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.9e-07 57.0 54 51.9
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.9e-07 57.0 37 62.2
Sed0000866 Sechium edule HOM05D001415 ORTHO05D001075 5.9e-07 57.0 48 52.1
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 7.7e-07 56.6 48 56.2
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 7.7e-07 56.6 48 56.2
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 7.7e-07 56.6 54 48.1
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 1.0e-06 56.2 35 62.9
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 1.0e-06 56.2 58 44.8
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 1.3e-06 55.8 47 55.3
Carub.0005s1977 Capsella rubella HOM05D001415 ORTHO05D001075 1.3e-06 55.8 51 56.9
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.7e-06 55.5 49 49.0
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 2.2e-06 55.1 48 54.2
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 2.2e-06 55.1 48 54.2
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 2.2e-06 55.1 33 66.7
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 2.2e-06 55.1 62 43.5
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.9e-06 54.7 51 54.9
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 2.9e-06 54.7 58 44.8
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.9e-06 54.7 35 60.0
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 3.8e-06 54.3 43 60.5
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.8e-06 54.3 35 60.0
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 3.8e-06 54.3 60 43.3
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 3.8e-06 54.3 60 46.7
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.8e-06 54.3 56 48.2
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 5.0e-06 53.9 48 52.1
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.0e-06 53.9 55 49.1
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.0e-06 53.9 37 59.5
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 5.0e-06 53.9 52 46.2
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 5.0e-06 53.9 37 56.8
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 6.5e-06 53.5 60 43.3
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.5e-06 53.5 35 60.0
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 6.5e-06 53.5 35 60.0
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 6.5e-06 53.5 35 60.0
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 6.5e-06 53.5 47 48.9
HPP92_026000 Vanilla planifolia HOM05D001415 ORTHO05D001075 6.5e-06 53.5 39 59.0
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 8.5e-06 53.1 32 65.6
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 8.5e-06 53.1 35 57.1
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 8.5e-06 53.1 57 47.4


User provided reference genes

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