Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 1.6e-154 549.7 328 100.0
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 3.4e-53 213.0 151 74.8
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 1.3e-47 194.5 151 71.5
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.1e-46 191.4 151 72.8
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.1e-46 191.4 151 72.8
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 2.0e-21 107.5 154 44.8
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 1.5e-19 101.3 156 42.9
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 5.6e-19 99.4 150 44.0
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 5.6e-19 99.4 133 47.4
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 7.3e-19 99.0 132 47.0
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 9.5e-19 98.6 130 47.7
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 1.2e-18 98.2 170 41.8
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 8.0e-18 95.5 151 41.1
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 8.0e-18 95.5 132 44.7
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 1.4e-17 94.7 141 44.7
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 5.2e-17 92.8 152 43.4
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 6.8e-17 92.4 130 45.4
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.2e-16 91.7 132 46.2
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 1.2e-16 91.7 157 38.9
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 1.5e-16 91.3 134 43.3
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 3.4e-16 90.1 144 45.1
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 4.4e-16 89.7 152 39.5
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.3e-15 88.2 129 43.4
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.3e-15 88.2 129 43.4
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 1.3e-15 88.2 158 40.5
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.7e-15 87.8 131 45.0
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 1.7e-15 87.8 133 44.4
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.2e-15 87.4 129 43.4
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.9e-15 87.0 139 43.2
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 3.7e-15 86.7 125 43.2
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 3.7e-15 86.7 125 43.2
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 3.7e-15 86.7 160 38.8
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 4.9e-15 86.3 153 39.9
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 6.4e-15 85.9 151 39.7
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.1e-14 85.1 153 42.5
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.1e-14 85.1 133 42.1
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.4e-14 84.7 132 38.6
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 1.4e-14 84.7 153 38.6
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.8e-14 84.3 152 38.8
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 4.1e-14 83.2 132 43.9
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 5.4e-14 82.8 151 40.4
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 7.0e-14 82.4 132 37.9
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 7.0e-14 82.4 126 42.9
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 7.0e-14 82.4 149 39.6
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 2.0e-13 80.9 132 37.9
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 2.0e-13 80.9 133 41.4
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 3.5e-13 80.1 75 54.7
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 3.5e-13 80.1 150 41.3
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 4.6e-13 79.7 156 39.1
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 5.9e-13 79.3 153 39.2
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 5.9e-13 79.3 148 36.5
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 1.0e-12 78.6 134 41.0
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 1.7e-12 77.8 128 41.4
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 2.3e-12 77.4 130 40.0
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 3.0e-12 77.0 133 39.8
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 3.9e-12 76.6 105 42.9
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 3.9e-12 76.6 154 39.6
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 5.0e-12 76.3 75 53.3
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 5.0e-12 76.3 158 35.4
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 5.0e-12 76.3 151 40.4
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 6.6e-12 75.9 169 35.5
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 6.6e-12 75.9 132 39.4
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.5e-11 74.7 147 35.4
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.5e-11 74.7 116 41.4
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 1.9e-11 74.3 156 37.8
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 1.9e-11 74.3 156 37.8
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 3.3e-11 73.6 155 31.6
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 3.3e-11 73.6 146 36.3
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 4.3e-11 73.2 131 38.2
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 5.6e-11 72.8 130 39.2
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 5.6e-11 72.8 133 39.1
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 5.6e-11 72.8 76 53.9
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 5.6e-11 72.8 76 53.9
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 9.5e-11 72.0 153 37.3
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 9.5e-11 72.0 119 41.2
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 9.5e-11 72.0 160 35.0
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.8e-10 70.5 162 30.9
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 2.8e-10 70.5 162 31.5
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 4.7e-10 69.7 145 33.8
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 4.7e-10 69.7 166 33.1
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 4.7e-10 69.7 149 33.6
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 6.2e-10 69.3 206 35.0
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 6.2e-10 69.3 152 34.9
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 6.2e-10 69.3 157 36.3
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 6.2e-10 69.3 154 35.7
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 8.0e-10 68.9 113 38.1
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 8.0e-10 68.9 134 36.6
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 1.0e-09 68.6 152 36.2
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 1.4e-09 68.2 157 36.3
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 3.1e-09 67.0 133 35.3
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 3.1e-09 67.0 133 35.3
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 3.1e-09 67.0 155 35.5
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 4.0e-09 66.6 66 47.0
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.0e-09 66.6 161 30.4
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 4.0e-09 66.6 143 34.3
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 5.2e-09 66.2 144 36.1
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 5.2e-09 66.2 130 34.6
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 6.8e-09 65.9 111 36.9
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 6.8e-09 65.9 66 47.0
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 6.8e-09 65.9 86 47.7
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 6.8e-09 65.9 136 35.3
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 6.8e-09 65.9 62 50.0
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 8.9e-09 65.5 156 32.1
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 8.9e-09 65.5 156 32.1
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 1.2e-08 65.1 147 31.3
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 1.5e-08 64.7 66 45.5
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 1.5e-08 64.7 120 34.2
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 2.0e-08 64.3 66 45.5
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 2.0e-08 64.3 129 38.8
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 2.0e-08 64.3 145 31.7
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.6e-08 63.9 167 34.1
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.6e-08 63.9 122 39.3
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 3.4e-08 63.5 134 30.6
Cpa.g.sc148.20 Carica papaya HOM05D008192 ORTHO05D010301 3.4e-08 63.5 74 45.9
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 3.4e-08 63.5 160 27.5
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 3.4e-08 63.5 77 49.4
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.4e-08 63.2 132 38.6
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 5.8e-08 62.8 55 54.5
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 5.8e-08 62.8 75 50.7
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 5.8e-08 62.8 89 42.7
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 5.8e-08 62.8 175 33.7
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 5.8e-08 62.8 115 35.7
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 5.8e-08 62.8 78 46.2
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 7.5e-08 62.4 111 39.6
ECA240G4545 Erigeron canadensis HOM05D003759 ORTHO05D004149 7.5e-08 62.4 74 51.4
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 9.8e-08 62.0 104 37.5
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 9.8e-08 62.0 146 32.2
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 9.8e-08 62.0 122 36.9
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 9.8e-08 62.0 127 34.6
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 1.3e-07 61.6 65 50.8
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 1.3e-07 61.6 110 38.2
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 1.3e-07 61.6 129 35.7
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.3e-07 61.6 169 30.8
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 2.9e-07 60.5 130 38.5
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 2.9e-07 60.5 131 35.1
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 3.7e-07 60.1 65 49.2
CDE02G3703 Ceratophyllum demersum HOM05D003759 ORTHO05D004149 3.7e-07 60.1 85 47.1
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 4.9e-07 59.7 92 40.2
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 4.9e-07 59.7 101 38.6
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 4.9e-07 59.7 88 42.0
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 6.4e-07 59.3 137 35.0
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 6.4e-07 59.3 137 35.0
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 6.4e-07 59.3 137 35.0
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 6.4e-07 59.3 128 31.2
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 8.3e-07 58.9 74 45.9
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 1.1e-06 58.5 74 44.6
SalBow4G3126 Salvia bowleyana HOM05D008192 ORTHO05D010301 1.1e-06 58.5 76 40.8
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 1.4e-06 58.2 140 34.3
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 1.4e-06 58.2 65 47.7
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 1.4e-06 58.2 102 39.2
CDE05G3257 Ceratophyllum demersum HOM05D003759 ORTHO05D004149 1.9e-06 57.8 98 42.9
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.9e-06 57.8 118 37.3
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 2.4e-06 57.4 65 47.7
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 2.4e-06 57.4 131 34.4
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 2.4e-06 57.4 65 47.7
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 2.4e-06 57.4 131 34.4
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 2.4e-06 57.4 102 38.2
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 3.2e-06 57.0 102 35.3
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 4.1e-06 56.6 102 39.2
Gorai.009G063500 Gossypium raimondii HOM05D008192 ORTHO05D010301 4.1e-06 56.6 120 33.3
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 4.1e-06 56.6 95 43.2
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 9.2e-06 55.5 120 30.8
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 9.2e-06 55.5 93 44.1
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 9.2e-06 55.5 120 33.3
Gohir.D05G062401 Gossypium hirsutum HOM05D008192 ORTHO05D010301 9.2e-06 55.5 62 48.4
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 9.2e-06 55.5 118 36.4


User provided reference genes

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