Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 8.6e-191 670.2 359 100.0
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 9.9e-171 603.6 360 90.0
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 1.6e-165 586.3 360 88.1
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.1e-161 573.5 359 87.5
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.8e-141 505.8 364 75.3
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 4.8e-141 505.0 359 74.7
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.5e-139 500.0 363 74.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 2.9e-138 495.7 361 74.0
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 8.8e-135 484.2 336 78.3
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 2.6e-134 482.6 343 75.8
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 3.3e-134 482.3 359 73.8
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.7e-134 481.5 361 73.1
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.3e-133 480.3 337 75.7
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.3e-133 480.3 367 72.5
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 6.3e-133 478.0 297 83.5
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 4.1e-132 475.3 296 85.1
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 5.3e-132 474.9 325 78.5
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 7.0e-132 474.6 362 72.1
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 9.1e-132 474.2 360 72.2
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 3.5e-131 472.2 359 71.9
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 5.9e-131 471.5 317 79.8
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.7e-131 471.1 327 77.7
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.1e-129 467.2 361 72.9
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.1e-129 467.2 361 71.7
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 1.4e-129 466.8 361 72.9
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 3.2e-129 465.7 311 80.1
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 7.2e-129 464.5 353 73.1
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 7.2e-129 464.5 360 72.2
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.2e-128 463.8 318 78.6
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.6e-128 463.4 361 72.6
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 8.0e-128 461.1 364 72.3
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 2.3e-127 459.5 386 68.7
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 5.2e-127 458.4 346 73.7
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 5.2e-127 458.4 345 74.2
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 6.7e-127 458.0 345 73.6
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 8.8e-127 457.6 352 73.0
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.3e-126 455.7 382 67.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 5.7e-126 454.9 266 89.8
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 7.4e-126 454.5 291 82.1
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 9.7e-126 454.1 263 90.1
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 9.7e-126 454.1 351 70.4
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.3e-125 453.8 317 76.0
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.7e-125 453.4 326 73.6
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 2.8e-125 452.6 350 71.1
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 4.8e-125 451.8 328 74.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.1e-124 450.7 266 89.1
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.1e-124 450.7 304 80.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 2.4e-124 449.5 275 85.5
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.1e-124 449.1 355 69.0
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 4.1e-124 448.7 290 82.8
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 5.3e-124 448.4 301 80.7
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.6e-123 446.8 357 70.0
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.0e-123 446.4 292 79.8
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 2.0e-123 446.4 329 74.5
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 2.6e-123 446.0 303 80.9
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.9e-123 444.9 357 69.5
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.3e-122 443.7 303 79.5
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.2e-122 443.0 297 79.8
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 3.8e-122 442.2 334 72.8
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.5e-121 440.3 345 71.0
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 9.4e-121 437.6 283 82.7
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.7e-120 436.0 321 75.1
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.0e-119 434.1 297 79.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.0e-119 434.1 285 80.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.8e-119 433.3 314 75.5
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 3.0e-119 432.6 321 74.1
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 5.2e-119 431.8 321 74.1
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 8.8e-119 431.0 313 76.0
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 8.8e-119 431.0 305 76.7
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 8.8e-119 431.0 292 80.5
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.3e-118 429.1 327 70.9
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 4.4e-118 428.7 289 79.6
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 4.4e-118 428.7 343 69.1
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 9.7e-118 427.6 265 85.7
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.3e-117 427.2 331 69.2
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 4.8e-117 425.2 265 85.7
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 6.3e-117 424.9 311 75.2
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 1.1e-116 424.1 304 77.0
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.1e-116 424.1 306 75.5
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.8e-116 423.3 310 75.5
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 4.1e-116 422.2 293 78.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.2e-115 420.6 370 62.7
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 5.9e-115 418.3 311 74.0
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 7.7e-115 417.9 329 71.4
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.8e-114 415.6 338 68.3
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 5.0e-114 415.2 323 70.3
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 8.5e-114 414.5 316 73.1
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 1.0e-111 407.5 278 79.5
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 4.0e-111 405.6 305 73.4
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 4.8e-109 398.7 269 77.7
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.2e-107 394.0 315 69.2
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.2e-107 394.0 291 73.5
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 4.5e-107 392.1 259 80.3
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 5.9e-107 391.7 358 63.7
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 3.3e-105 386.0 319 69.0
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 2.3e-103 379.8 394 60.7
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.3e-103 379.8 395 60.0
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.8e-101 372.9 260 77.7
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.6e-99 367.1 246 77.6
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 7.3e-97 358.2 218 85.3
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 2.8e-96 356.3 254 73.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 1.7e-93 347.1 253 72.3
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 3.5e-91 339.3 309 64.1
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.9e-90 335.9 195 88.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 2.8e-88 329.7 258 70.5
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.2e-86 324.3 241 73.9
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.1e-84 317.8 230 76.5
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 6.0e-83 312.0 260 64.6
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.5e-78 297.4 275 64.4
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 8.6e-74 281.6 238 66.4
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.1e-68 264.6 244 57.4
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 3.2e-68 263.1 279 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.3e-61 241.1 298 52.0
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 6.4e-61 238.8 230 62.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 2.4e-60 236.9 281 50.2
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 7.8e-59 231.9 165 78.2
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 6.2e-56 222.2 230 60.9
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.1e-48 197.2 135 81.5
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.8e-47 194.1 140 78.6
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 7.4e-41 172.2 98 90.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.8e-39 167.5 115 82.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 2.9e-37 160.2 204 54.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.8e-34 151.0 93 82.8
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.4e-31 141.4 148 60.1
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.0e-31 138.7 126 61.9
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.6e-30 137.1 126 61.1
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.5e-20 104.0 80 67.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.6e-17 94.0 96 59.4
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 3.1e-15 87.0 60 75.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 6.5e-13 79.3 191 34.0
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 5.2e-10 69.7 47 76.6


User provided reference genes

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