Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 3.0e-169 599.4 584 100.0
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.7e-148 530.4 584 89.7
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 3.2e-134 483.0 584 83.0
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 5.6e-123 445.7 535 86.2
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.3e-115 419.5 581 76.6
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 4.0e-113 412.9 581 73.1
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.3e-111 407.9 581 78.8
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 7.1e-110 402.1 581 78.7
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 7.1e-110 402.1 581 77.3
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 7.1e-110 402.1 581 77.3
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 3.5e-109 399.8 584 76.2
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.1e-108 396.0 581 75.6
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 7.4e-107 392.1 581 77.8
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.1e-106 390.6 581 77.3
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.2e-106 389.0 581 77.5
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 9.0e-105 385.2 581 76.1
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.2e-104 384.8 581 79.5
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 2.0e-104 384.0 581 74.5
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.7e-103 380.9 581 76.1
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.2e-103 380.6 581 71.3
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.4e-102 377.9 583 71.5
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 7.1e-102 375.6 581 76.6
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.3e-100 370.5 581 74.0
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 4.3e-99 366.3 581 76.1
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 2.2e-98 364.0 581 74.9
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 6.9e-97 359.0 583 74.3
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 5.0e-95 352.8 583 73.2
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 8.5e-95 352.1 598 72.4
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 4.2e-94 349.7 581 73.3
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 4.2e-94 349.7 581 72.6
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 5.5e-94 349.4 581 72.6
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.6e-93 346.7 581 74.7
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 3.6e-93 346.7 583 69.3
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 7.9e-93 345.5 584 62.0
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 6.7e-92 342.4 589 72.0
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 8.8e-92 342.0 581 76.2
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.5e-91 340.5 591 64.6
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 5.7e-91 339.3 581 70.4
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 9.7e-91 338.6 505 75.6
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 6.3e-90 335.9 581 76.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.4e-89 334.0 582 69.6
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 3.1e-89 333.6 584 68.7
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 5.3e-89 332.8 587 68.1
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 2.6e-88 330.5 557 69.5
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.3e-87 328.2 589 70.8
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.2e-87 327.4 581 69.7
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 6.5e-87 325.9 581 72.1
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 2.5e-86 323.9 581 72.3
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 9.4e-86 322.0 583 54.0
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 2.3e-84 317.4 581 71.4
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 3.9e-84 316.6 581 68.3
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 2.0e-83 314.3 589 66.2
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 3.3e-83 313.5 563 71.0
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 7.4e-83 312.4 510 73.5
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.3e-82 311.6 581 70.7
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.7e-82 311.2 587 67.1
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.7e-82 311.2 581 68.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.7e-82 310.1 585 70.8
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.8e-82 309.7 574 58.5
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.8e-81 307.8 581 71.6
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 7.0e-81 305.8 564 72.3
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.6e-80 303.9 641 62.7
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 3.5e-80 303.5 562 71.2
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.2e-79 300.8 510 74.1
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.5e-79 298.9 311 68.5
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.5e-78 297.4 581 68.2
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 7.2e-78 295.8 594 63.5
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.0e-76 292.0 582 68.6
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 2.3e-76 290.8 315 62.5
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.5e-75 288.1 585 69.2
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.0e-75 287.7 559 74.2
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 3.3e-75 287.0 510 62.7
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 7.5e-75 285.8 581 68.8
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.8e-74 283.9 585 68.7
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.1e-73 282.0 582 68.6
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.4e-73 281.6 599 61.8
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.8e-73 281.2 582 64.6
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.8e-73 281.2 681 61.5
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 3.1e-73 280.4 626 63.9
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 4.1e-73 280.0 583 67.8
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 7.0e-73 279.3 598 67.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 4.5e-72 276.6 562 70.5
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.7e-71 274.6 581 67.5
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.5e-70 271.6 561 62.7
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.9e-70 271.2 588 66.7
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.5e-70 269.6 328 72.3
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 6.1e-69 266.2 446 78.3
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.4e-65 254.2 584 66.1
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 5.4e-65 253.1 411 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 2.0e-64 251.1 590 61.2
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 7.7e-64 249.2 583 67.1
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.3e-63 248.4 518 72.6
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.1e-62 245.4 406 64.5
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.5e-59 235.0 589 63.5
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.0e-59 234.6 220 69.5
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 7.0e-57 226.1 562 59.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 2.7e-56 224.2 585 59.8
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 5.9e-56 223.0 581 64.0
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.1e-53 214.5 558 37.1
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.2e-51 208.8 593 55.8
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.2e-48 198.7 544 61.6
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.2e-45 188.7 586 60.8
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 2.6e-43 181.0 198 63.6
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.1e-36 159.1 147 55.8
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 2.6e-35 154.5 227 55.1
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.2e-29 133.3 121 63.6
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-25 119.4 141 64.5
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-25 119.4 141 64.5
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 9.2e-25 119.4 141 64.5
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 5.1e-23 113.6 245 31.4
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.8e-21 107.8 75 70.7
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 69.3
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 69.3
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.1e-20 104.4 75 68.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 6.8e-20 103.2 75 68.0
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.5e-19 102.1 98 58.2
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.9e-17 95.1 98 80.6
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 9.3e-17 92.8 113 46.0
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 3.0e-15 87.8 98 77.6
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 6.2e-13 80.1 53 69.8
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 5.3e-12 77.0 60 61.7
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.2e-11 75.9 75 46.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.2e-10 71.6 130 40.8
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 1.1e-09 69.3 225 43.6
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.9e-09 68.6 295 30.5
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.6e-08 65.5 73 46.6


User provided reference genes

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