Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 7.5e-127 457.2 233 100.0
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 4.7e-121 438.0 232 96.1
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 1.0e-120 436.8 232 95.7
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 1.0e-120 436.8 232 96.1
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 5.2e-120 434.5 232 94.8
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 5.2e-120 434.5 232 94.8
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 2.0e-119 432.6 232 94.4
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 2.0e-119 432.6 232 94.4
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 2.0e-119 432.6 232 94.4
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 3.4e-119 431.8 232 94.0
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 1.3e-118 429.9 232 94.8
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 1.7e-118 429.5 232 94.0
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 3.7e-118 428.3 232 94.8
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 3.7e-118 428.3 232 94.0
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 6.3e-118 427.6 232 94.4
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 6.3e-118 427.6 232 94.4
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 6.3e-118 427.6 232 94.4
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.4e-117 426.4 232 94.4
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 5.4e-117 424.5 232 92.7
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 2.7e-116 422.2 228 94.3
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 4.5e-116 421.4 232 93.1
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 4.5e-116 421.4 232 93.1
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 7.7e-116 420.6 232 92.7
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 1.0e-115 420.2 232 92.7
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 1.0e-115 420.2 232 92.7
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 1.7e-115 419.5 232 93.5
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 5.5e-114 414.5 221 94.6
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 1.0e-112 410.2 232 90.5
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 5.2e-112 407.9 232 90.5
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 5.2e-112 407.9 232 90.5
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 7.5e-111 404.1 232 90.1
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 9.8e-111 403.7 232 90.9
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 8.3e-110 400.6 231 89.2
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 3.1e-109 398.7 221 92.8
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-106 390.2 221 89.6
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 8.0e-105 384.0 204 94.6
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 8.0e-105 384.0 204 94.6
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 4.0e-104 381.7 203 94.6
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.5e-103 379.8 217 89.9
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 2.6e-103 379.0 201 95.0
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 5.7e-103 377.9 201 95.5
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 1.7e-102 376.3 221 88.7
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 8.3e-102 374.0 201 94.5
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 1.3e-99 366.7 192 95.3
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 2.5e-98 362.5 202 89.6
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 2.5e-98 362.5 190 95.3
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 2.3e-96 355.9 200 89.5
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 2.2e-94 349.4 201 88.1
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 8.3e-94 347.4 192 92.7
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 1.1e-93 347.1 230 80.0
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 4.1e-93 345.1 195 90.3
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 5.4e-93 344.7 202 86.1
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 7.0e-93 344.4 171 100.0
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 2.1e-89 332.8 201 86.6
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.8e-89 332.4 203 84.2
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.3e-86 323.6 209 81.3
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 2.4e-85 319.3 173 93.6
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 3.2e-85 318.9 178 88.8
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 2.3e-83 312.8 232 73.7
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.6e-81 305.4 209 78.9
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 3.6e-81 305.4 160 94.4
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 3.1e-80 302.4 189 85.2
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-79 300.1 210 79.0
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 1.1e-74 283.9 157 91.1
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.5e-66 256.1 133 94.0
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 2.8e-65 252.7 137 90.5
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 9.9e-63 244.2 204 66.2
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 1.6e-60 236.9 129 94.6
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 2.3e-59 233.0 137 85.4
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 1.8e-56 223.4 125 91.2
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 9.0e-56 221.1 112 93.8
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.3e-51 206.5 118 87.3
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.3e-46 190.7 119 80.7
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 7.1e-45 184.9 107 88.8
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 1.0e-43 181.0 136 71.3
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 2.3e-43 179.9 105 90.5
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 3.0e-43 179.5 98 88.8
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 6.7e-43 178.3 108 82.4
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 1.1e-40 171.0 99 90.9
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.8e-40 170.2 88 92.0
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 5.3e-40 168.7 97 86.6
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 2.9e-38 162.9 101 83.2
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 9.3e-37 157.9 96 87.5
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 4.3e-34 149.1 107 72.9
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 1.7e-33 147.1 186 42.5
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 2.2e-33 146.7 73 94.5
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 3.7e-33 146.0 77 88.3
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.1e-32 144.4 157 58.0
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 1.8e-32 143.7 75 90.7
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.0e-30 137.9 69 92.8
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.1e-29 134.4 72 86.1
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 4.2e-29 132.5 68 91.2
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.1e-27 125.6 79 78.5
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 8.2e-25 118.2 60 93.3
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-24 117.9 90 75.6
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 3.1e-24 116.3 65 84.6
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 7.7e-23 111.7 69 79.7
BraSC54t46378Z Brassica rapa HOM05D007194 ORTHO05D009182 4.7e-20 102.4 59 89.8
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 6.3e-17 92.0 134 45.5
SHI21961 Sapria himalayana HOM05D007194 ORTHO05D009182 5.0e-14 82.4 53 83.0
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 6.5e-14 82.0 55 74.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 8.0e-12 75.1 42 88.1
SHI49604 Sapria himalayana HOM05D007194 ORTHO05D009182 4.4e-10 69.3 37 94.6
Dinv00475 Davidia involucrata HOM05D007194 ORTHO05D009182 1.1e-08 64.7 35 91.4
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 1.6e-07 60.8 46 69.6
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 2.7e-07 60.1 44 72.7


User provided reference genes

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