Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021709 Sechium edule HOM05D000782 ORTHO05D000571 1.1e-101 373.2 188 100.0
CsaV3_7G022830 Cucumis sativus L. HOM05D000782 ORTHO05D000571 5.2e-78 294.7 188 79.8
ClCG08G003160 Citrullus lanatus HOM05D000782 ORTHO05D000571 4.4e-77 291.6 178 83.1
ClCG03G000180 Citrullus lanatus HOM05D000782 ORTHO05D000571 5.7e-77 291.2 220 71.4
MELO3C024977.2 Cucumis melo HOM05D000782 ORTHO05D000571 2.8e-76 288.9 188 77.7
Duzib168G2101 Durio zibethinus HOM05D000782 ORTHO05D000571 2.2e-52 209.5 188 61.7
MD11G1060400 Malus domestica HOM05D000782 ORTHO05D000571 2.3e-46 189.5 176 60.2
Thecc.09G359700 Theobroma cacao HOM05D000782 ORTHO05D000571 2.3e-46 189.5 179 55.3
QL01p025713 Quercus lobata HOM05D000782 ORTHO05D000571 6.8e-46 188.0 176 55.1
Ciclev10002580m.g Citrus clementina HOM05D000782 ORTHO05D000571 8.9e-46 187.6 187 54.0
Atru.chr1.2094 Acer truncatum HOM05D000782 ORTHO05D000571 1.2e-45 187.2 181 57.5
QL04p095962 Quercus lobata HOM05D000782 ORTHO05D000571 2.6e-45 186.0 176 55.1
QL04p095983 Quercus lobata HOM05D000782 ORTHO05D000571 2.6e-45 186.0 176 55.1
Prupe.6G045600 Prunus persica HOM05D000782 ORTHO05D000571 7.5e-45 184.5 188 55.9
GSVIVG01024611001 Vitis vinifera HOM05D000001 ORTHO05D012572 9.8e-45 184.1 177 57.1
Gohir.D03G143800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.2e-44 183.0 190 53.7
Manes.18G126600 Manihot esculenta HOM05D000782 ORTHO05D000571 2.2e-44 183.0 180 56.1
MD03G1058200 Malus domestica HOM05D000782 ORTHO05D000571 2.9e-44 182.6 176 57.4
Sabra19G0130500 Salix brachista HOM05D000782 ORTHO05D000571 8.3e-44 181.0 180 55.6
Gorai.003G151100 Gossypium raimondii HOM05D000782 ORTHO05D000571 2.4e-43 179.5 190 53.2
COL.COLO4_11173 Corchorus olitorius HOM05D000782 ORTHO05D000571 4.1e-43 178.7 179 55.9
TAR369G0987 Trochodendron aralioides HOM05D000782 ORTHO05D000571 5.4e-43 178.3 188 52.7
FvH4_3g39960 Fragaria vesca HOM05D000782 ORTHO05D000571 7.0e-43 177.9 177 55.4
FAN16G3647 Fragaria x ananassa HOM05D000001 ORTHO05D012572 7.0e-43 177.9 177 55.4
FAN25G1963 Fragaria x ananassa HOM05D000001 ORTHO05D012572 3.5e-42 175.6 177 55.4
FAN21G0593 Fragaria x ananassa HOM05D000782 ORTHO05D000571 6.0e-42 174.9 184 53.8
Hma1.2p1_1421F.1_g282460 Hydrangea macrophylla HOM05D000782 ORTHO05D000571 6.0e-42 174.9 195 53.3
Sabra19G0124100 Salix brachista HOM05D000782 ORTHO05D000571 3.9e-41 172.2 205 49.3
RcHm_v2.0_Chr5g0071971 Rosa chinensis HOM05D000782 ORTHO05D000571 8.6e-41 171.0 176 53.4
Eucgr.K01367 Eucalyptus grandis HOM05D000782 ORTHO05D000571 9.5e-40 167.5 186 53.2
Actinidia32599 Actinidia chinensis HOM05D000782 ORTHO05D000571 1.2e-39 167.2 184 52.2
Lj2A1095G46 Lonicera japonica HOM05D000782 ORTHO05D000571 1.1e-38 164.1 177 53.7
Migut.N00751 Erythranthe guttata HOM05D000782 ORTHO05D000571 1.8e-38 163.3 180 48.3
Gohir.D08G221000 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.8e-38 163.3 181 50.3
Gorai.004G234700 Gossypium raimondii HOM05D000782 ORTHO05D000571 1.8e-38 163.3 181 50.3
Oeu050028.1 Olea europaea HOM05D000782 ORTHO05D000571 2.3e-38 162.9 195 49.2
TWI79G1409 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 5.2e-38 161.8 194 50.0
DCAR_023953 Daucus carota HOM05D000782 ORTHO05D000571 1.2e-37 160.6 189 48.7
Haze_24431 Corylus avellana HOM05D000782 ORTHO05D000571 1.5e-37 160.2 179 51.4
Glyma.14G200600 Glycine max HOM05D000782 ORTHO05D000571 1.3e-36 157.1 195 47.7
Cpa.g.sc2.336 Carica papaya HOM05D000782 ORTHO05D000571 4.9e-36 155.2 179 45.8
Cc01_g15010 Coffea canephora HOM05D000782 ORTHO05D000571 6.4e-36 154.8 203 41.4
CiPaw.14G053200 Carya illinoinensis HOM05D000782 ORTHO05D000571 1.9e-35 153.3 178 50.6
vmacro02905 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.4e-35 152.9 185 49.7
Psat0s2794g0120 Pisum sativum HOM05D000782 ORTHO05D000571 2.1e-34 149.8 178 48.9
Phvul.008G250800 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 4.6e-34 148.7 186 47.3
TPR.G25342 Trifolium pratense HOM05D000782 ORTHO05D000571 1.0e-33 147.5 181 48.1
SalBow2G3499 Salvia bowleyana HOM05D000782 ORTHO05D000571 3.0e-33 146.0 185 43.8
Lsat_1_v5_gn_8_108720 Lactuca sativa HOM05D000782 ORTHO05D000571 3.9e-33 145.6 187 46.5
Rhsim13G0062600 Rhododendron simsii HOM05D000782 ORTHO05D000571 5.1e-33 145.2 179 48.0
Medtr5g074550 Medicago truncatula HOM05D000782 ORTHO05D000571 1.5e-32 143.7 182 46.7
Nn2g11061 Nelumbo nucifera HOM05D000782 ORTHO05D000571 1.9e-32 143.3 194 45.4
MSTRG.12694 Avicennia marina HOM05D000782 ORTHO05D000571 2.5e-32 142.9 184 42.4
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 3.3e-32 142.5 166 48.8
MBI15_g20019_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 4.3e-32 142.1 194 44.8
VMungo0647G1733 Vigna mungo HOM05D000782 ORTHO05D000571 4.3e-32 142.1 186 45.7
C03p19910 Brassica napus HOM05D000782 ORTHO05D000571 1.6e-31 140.2 175 46.3
BolC3t14370H Brassica oleracea HOM05D000782 ORTHO05D000571 1.6e-31 140.2 175 46.3
BcaC01g06019 Brassica carinata HOM05D000782 ORTHO05D000571 2.1e-31 139.8 176 46.6
A03p16910 Brassica napus HOM05D000782 ORTHO05D000571 3.6e-31 139.0 178 46.6
LjContig00141g0026997 Lotus japonicus HOM05D000782 ORTHO05D000571 3.6e-31 139.0 183 43.7
AL4G25120 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 4.7e-31 138.7 175 48.0
BraA03t10980Z Brassica rapa HOM05D000782 ORTHO05D000571 4.7e-31 138.7 178 46.6
Thhalv10017277m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 6.2e-31 138.3 177 45.8
Carub.0004s1143 Capsella rubella HOM05D000782 ORTHO05D000571 8.1e-31 137.9 175 46.9
CiPaw.13G067500 Carya illinoinensis HOM05D000782 ORTHO05D000571 1.1e-30 137.5 179 46.4
Aa31LG5G6450 Aethionema arabicum HOM05D002411 ORTHO05D002564 1.4e-30 137.1 176 46.0
Lalb_Chr10g0103661 Lupinus albus HOM05D000782 ORTHO05D000571 1.8e-30 136.7 178 47.8
Potri.019G126300 Populus trichocarpa HOM05D000782 ORTHO05D000571 1.8e-30 136.7 181 48.1
Sp4g12850 Schrenkiella parvula HOM05D000782 ORTHO05D000571 1.8e-30 136.7 176 47.2
THA.LOC104800764 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 3.1e-30 136.0 176 43.8
CARHR123590 Cardamine hirsuta HOM05D000782 ORTHO05D000571 5.2e-30 135.2 172 47.7
AT2G30270 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 6.8e-30 134.8 175 47.4
Gohir.A03G024700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.5e-29 133.7 153 51.6
PGSC0003DMG400030460 Solanum tuberosum HOM05D000782 ORTHO05D000571 1.5e-29 133.7 183 41.0
HanXRQChr11g0339921 Helianthus annuus HOM05D000782 ORTHO05D000571 2.0e-29 133.3 186 45.7
Dinv12248 Davidia involucrata HOM05D000782 ORTHO05D000571 3.4e-29 132.5 154 49.4
PSO170G6702 Papaver somniferum HOM05D000782 ORTHO05D000571 5.8e-29 131.7 194 43.3
Solyc06g082380.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 7.6e-29 131.3 178 40.4
Sopen06g033770 Solanum pennellii HOM05D000782 ORTHO05D000571 1.3e-28 130.6 178 39.9
CAN.G1095.28 Capsicum annuum HOM05D000782 ORTHO05D000571 1.7e-28 130.2 180 42.2
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.4e-27 127.1 159 45.3
ECA236G0449 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.9e-27 126.7 158 48.7
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 7.1e-27 124.8 148 49.3
Gohir.A08G203700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 7.1e-27 124.8 148 48.6
TAR623G0287 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.2e-26 124.0 140 48.6
TAR623G1242 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.2e-26 124.0 136 50.0
Ah.08g215420 Amaranthus hybridus HOM05D000782 ORTHO05D000571 2.1e-26 123.2 174 41.4
arahy.Tifrunner.gnm1.ann1.NRMQ9K Arachis hypogaea HOM05D000782 ORTHO05D000571 2.7e-26 122.9 183 41.5
MD17G1185800 Malus domestica HOM05D000782 ORTHO05D000571 2.7e-26 122.9 137 54.0
Medtr5g074560 Medicago truncatula HOM05D000782 ORTHO05D000571 2.3e-25 119.8 178 40.4
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 3.3e-24 115.9 177 39.5
EL10Ac7g15871 Beta vulgaris HOM05D000782 ORTHO05D000571 9.6e-24 114.4 175 38.3
CANSAT54G1735 Cannabis sativa HOM05D000782 ORTHO05D000571 2.1e-23 113.2 192 39.6
AUR62009715 Chenopodium quinoa HOM05D000782 ORTHO05D000571 6.2e-23 111.7 177 40.1
SHI19227 Sapria himalayana HOM05D000782 ORTHO05D000571 6.9e-22 108.2 101 54.5
PSO017G2384 Papaver somniferum HOM05D000782 ORTHO05D000571 1.2e-21 107.5 193 36.8
CSS0016607 Camellia sinensis var. sinensis HOM05D000782 ORTHO05D000571 2.0e-21 106.7 91 61.5
SGA_v2.0_scaffold120G32965 Striga asiatica HOM05D000782 ORTHO05D000571 2.9e-20 102.8 201 33.8
ATR0681G158 Amborella trichopoda HOM05D000782 ORTHO05D000571 7.8e-18 94.7 206 35.9
TAR623G0969 Trochodendron aralioides HOM05D000782 ORTHO05D000571 3.9e-17 92.4 71 60.6
Oeu050030.1 Olea europaea HOM05D000782 ORTHO05D000571 6.6e-17 91.7 65 69.2
Glyma.02G233000 Glycine max HOM05D000782 ORTHO05D000571 8.7e-17 91.3 144 41.0
Sc21g0004900 Simmondsia chinensis HOM05D000782 ORTHO05D000571 1.1e-16 90.9 139 36.0
Aqoxy4G02166 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 7.3e-16 88.2 158 36.1
DCAR_028905 Daucus carota HOM05D000782 ORTHO05D000571 2.1e-15 86.7 179 34.1
Zm00001eb286650 Zea mays HOM05D000782 ORTHO05D000571 1.8e-14 83.6 170 31.2
DCAR_015455 Daucus carota HOM05D000782 ORTHO05D000571 5.3e-14 82.0 180 32.8
DCAR_028903 Daucus carota HOM05D000782 ORTHO05D000571 5.3e-14 82.0 179 33.5
Lj3A943G21 Lonicera japonica HOM05D000782 ORTHO05D000571 9.0e-14 81.3 181 33.7
CANSAT35G0618 Cannabis sativa HOM05D000782 ORTHO05D000571 1.2e-13 80.9 190 32.1
Lalb_Chr03g0043661 Lupinus albus HOM05D000782 ORTHO05D000571 2.0e-13 80.1 198 31.8
FvH4_6g10350 Fragaria vesca HOM05D000782 ORTHO05D000571 3.4e-13 79.3 187 34.8
PSO017G2627 Papaver somniferum HOM05D000782 ORTHO05D000571 7.6e-13 78.2 187 33.2
PSO170G5746 Papaver somniferum HOM05D000782 ORTHO05D000571 7.6e-13 78.2 187 33.2
Cc06_g00620 Coffea canephora HOM05D000782 ORTHO05D000571 9.9e-13 77.8 187 32.6
HPP92_001136 Vanilla planifolia HOM05D000782 ORTHO05D000571 9.9e-13 77.8 147 36.7
FAN14G2230 Fragaria x ananassa HOM05D000782 ORTHO05D000571 1.3e-12 77.4 187 34.2
Os05g0339200 Oryza sativa ssp. japonica HOM05D000782 ORTHO05D000571 1.3e-12 77.4 187 28.9
GSVIVG01030235001 Vitis vinifera HOM05D000782 ORTHO05D000571 1.3e-12 77.4 177 34.5
Ca_05681_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 1.7e-12 77.0 150 38.0
FAN09G0140 Fragaria x ananassa HOM05D000782 ORTHO05D000571 2.2e-12 76.6 187 33.7
DCAR_028900 Daucus carota HOM05D000782 ORTHO05D000571 4.9e-12 75.5 181 31.5
DCAR_028904 Daucus carota HOM05D000782 ORTHO05D000571 4.9e-12 75.5 180 29.4
THA.LOC104823312 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 4.9e-12 75.5 190 32.1
RcHm_v2.0_Chr3g0461171 Rosa chinensis HOM05D000782 ORTHO05D000571 6.4e-12 75.1 187 34.2
SEGI_32147 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 6.4e-12 75.1 177 31.6
ECA247G3886 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.1e-11 74.3 182 32.4
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.1e-11 74.3 68 50.0
Lsat_1_v5_gn_9_38141 Lactuca sativa HOM05D000782 ORTHO05D000571 1.4e-11 73.9 182 32.4
Prupe.6G287500 Prunus persica HOM05D000782 ORTHO05D000571 2.4e-11 73.2 187 31.6
FAN05G0058 Fragaria x ananassa HOM05D000782 ORTHO05D000571 3.2e-11 72.8 187 33.2
FAN05G5695 Fragaria x ananassa HOM05D000782 ORTHO05D000571 3.2e-11 72.8 187 33.2
Rhsim05G0227900 Rhododendron simsii HOM05D000782 ORTHO05D000571 3.2e-11 72.8 187 34.2
Aqoxy4G02163 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 5.4e-11 72.0 158 34.8
MD12G1182900 Malus domestica HOM05D000782 ORTHO05D000571 5.4e-11 72.0 187 32.1
vmacro20341 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 5.4e-11 72.0 187 30.5
Duzib268G0853 Durio zibethinus HOM05D000782 ORTHO05D000571 7.1e-11 71.6 180 30.6
Duzib268G1814 Durio zibethinus HOM05D000782 ORTHO05D000571 7.1e-11 71.6 190 30.0
BraA03t09400Z Brassica rapa HOM05D000782 ORTHO05D000571 1.2e-10 70.9 193 29.5
Actinidia29055 Actinidia chinensis HOM05D000782 ORTHO05D000571 1.6e-10 70.5 187 31.0
Ciclev10013687m.g Citrus clementina HOM05D000782 ORTHO05D000571 1.6e-10 70.5 180 31.7
Rhsim05G0227600 Rhododendron simsii HOM05D000782 ORTHO05D000571 2.1e-10 70.1 187 29.9
SEGI_38654 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 2.1e-10 70.1 177 31.1
Thecc.04G157000 Theobroma cacao HOM05D000782 ORTHO05D000571 2.1e-10 70.1 177 32.2
TPR.G35292 Trifolium pratense HOM05D000782 ORTHO05D000571 2.1e-10 70.1 158 31.0
CDE06G2424 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 2.7e-10 69.7 180 31.7
MD12G1183000 Malus domestica HOM05D000782 ORTHO05D000571 2.7e-10 69.7 179 31.3
vmacro20342 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.7e-10 69.7 187 28.9
BcaB01g06118 Brassica carinata HOM05D000782 ORTHO05D000571 3.5e-10 69.3 189 29.1
C03p00260 Brassica napus HOM05D000782 ORTHO05D000571 3.5e-10 69.3 189 29.1
BolC3t12602H Brassica oleracea HOM05D000782 ORTHO05D000571 3.5e-10 69.3 189 29.1
BcaB01g06251 Brassica carinata HOM05D000782 ORTHO05D000571 6.0e-10 68.6 188 28.7
Solyc09g014820.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 7.9e-10 68.2 134 33.6
Actinidia29056 Actinidia chinensis HOM05D000782 ORTHO05D000571 1.3e-09 67.4 186 29.6
arahy.Tifrunner.gnm1.ann1.E54J1V Arachis hypogaea HOM05D000782 ORTHO05D000571 1.8e-09 67.0 109 37.6
arahy.Tifrunner.gnm1.ann1.S8EST8 Arachis hypogaea HOM05D000782 ORTHO05D000571 1.8e-09 67.0 109 37.6
A03p00110 Brassica napus HOM05D000782 ORTHO05D000571 1.8e-09 67.0 189 28.6
Manes.10G008300 Manihot esculenta HOM05D000782 ORTHO05D000571 2.3e-09 66.6 182 29.7
Medtr7g072270 Medicago truncatula HOM05D000782 ORTHO05D000571 2.3e-09 66.6 109 33.9
RcHm_v2.0_Chr3g0461221 Rosa chinensis HOM05D000782 ORTHO05D000571 3.0e-09 66.2 179 30.2
CDE06G0912 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 3.9e-09 65.9 180 31.7
Lj2A64T52 Lonicera japonica HOM05D000782 ORTHO05D000571 3.9e-09 65.9 158 31.6
VMungo0331G0810 Vigna mungo HOM05D000782 ORTHO05D000571 3.9e-09 65.9 107 37.4
Duzib151G0149 Durio zibethinus HOM05D000782 ORTHO05D000571 1.1e-08 64.3 170 29.4
GSVIVG01030237001 Vitis vinifera HOM05D000782 ORTHO05D000571 1.1e-08 64.3 158 31.6
arahy.Tifrunner.gnm1.ann1.89W0PE Arachis hypogaea HOM05D000782 ORTHO05D000571 1.9e-08 63.5 141 33.3
Manes.09G114200 Manihot esculenta HOM05D000782 ORTHO05D000571 1.9e-08 63.5 175 30.3
Aa31LG1G23390 Aethionema arabicum HOM05D000782 ORTHO05D000571 2.5e-08 63.2 188 28.2
DCAR_028901 Daucus carota HOM05D000782 ORTHO05D000571 2.5e-08 63.2 152 30.9
CAN.G48.38 Capsicum annuum HOM05D000782 ORTHO05D000571 3.3e-08 62.8 71 46.5
Nitab4.5_0003270g0030 Nicotiana tabacum HOM05D000782 ORTHO05D000571 4.3e-08 62.4 133 32.3
SEGI_35763 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 4.3e-08 62.4 155 30.3
SEGI_07804 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 5.6e-08 62.0 177 28.8
Actinidia32552 Actinidia chinensis HOM05D000782 ORTHO05D000571 6.2e-07 58.5 153 28.1
Dinv10558 Davidia involucrata HOM05D000782 ORTHO05D000571 8.1e-07 58.2 178 28.1
SEGI_09718 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 8.1e-07 58.2 160 29.4
Phvul.008G219000 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 1.1e-06 57.8 167 28.1
arahy.Tifrunner.gnm1.ann1.AGG0WC Arachis hypogaea HOM05D000782 ORTHO05D000571 1.8e-06 57.0 112 32.1
arahy.Tifrunner.gnm1.ann1.7I9PPU Arachis hypogaea HOM05D000782 ORTHO05D000571 9.0e-06 54.7 112 32.1


User provided reference genes

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