Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 2.2e-91 339.0 174 100.0
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.4e-31 138.7 310 39.0
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.1e-29 132.1 103 70.9
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.5e-28 129.0 333 36.3
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 6.5e-27 124.8 103 68.0
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 5.6e-18 95.1 91 58.2
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 8.0e-17 91.3 91 56.0
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.3e-16 89.7 92 52.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 4.0e-16 89.0 92 53.3
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 4.0e-16 89.0 92 53.3
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 8.9e-16 87.8 91 53.8
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.0e-15 86.7 76 61.8
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 3.7e-14 82.4 75 61.3
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.1e-13 80.9 96 50.0
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.4e-13 80.5 77 59.7
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 2.4e-13 79.7 90 53.3
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.4e-13 79.7 89 56.2
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 3.2e-13 79.3 77 59.7
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 4.1e-13 79.0 74 59.5
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 5.4e-13 78.6 106 47.2
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 9.2e-13 77.8 86 54.7
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.7e-12 76.3 88 51.1
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 4.6e-12 75.5 104 43.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.6e-12 75.5 86 52.3
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 6.0e-12 75.1 77 55.8
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 1.0e-11 74.3 102 43.1
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.7e-11 73.6 93 50.5
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.7e-11 73.6 105 43.8
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.3e-11 73.2 77 54.5
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 2.3e-11 73.2 81 54.3
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.0e-11 72.8 82 54.9
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 3.0e-11 72.8 74 52.7
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 3.0e-11 72.8 106 47.2
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 3.9e-11 72.4 90 52.2
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 3.9e-11 72.4 90 52.2
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.0e-11 72.0 98 44.9
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 5.0e-11 72.0 99 50.5
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 6.6e-11 71.6 89 49.4
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 8.6e-11 71.2 95 44.2
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.1e-10 70.9 105 46.7
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.1e-10 70.9 87 51.7
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.1e-10 70.9 105 46.7
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.1e-10 70.9 91 49.5
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.1e-10 70.9 77 53.2
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.1e-10 70.9 106 45.3
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.5e-10 70.5 118 44.1
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.9e-10 70.1 92 51.1
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 1.9e-10 70.1 82 50.0
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 3.3e-10 69.3 91 49.5
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 3.3e-10 69.3 86 48.8
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 4.3e-10 68.9 79 50.6
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 5.6e-10 68.6 90 44.4
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 5.6e-10 68.6 85 51.8
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 7.3e-10 68.2 91 51.6
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 7.3e-10 68.2 76 55.3
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 7.3e-10 68.2 194 32.0
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 9.5e-10 67.8 87 49.4
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.2e-09 67.4 80 50.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.6e-09 67.0 97 47.4
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.6e-09 67.0 99 40.4
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.1e-09 66.6 96 44.8
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 3.6e-09 65.9 94 47.9
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 3.6e-09 65.9 89 48.3
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.6e-09 65.9 92 51.1
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 3.6e-09 65.9 113 38.1
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 4.7e-09 65.5 94 46.8
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.7e-09 65.5 81 50.6
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 8.0e-09 64.7 90 48.9
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 8.0e-09 64.7 113 40.7
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 8.0e-09 64.7 88 48.9
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 8.0e-09 64.7 92 47.8
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.4e-08 63.9 79 54.4
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.4e-08 63.9 78 53.8
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.8e-08 63.5 94 47.9
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.8e-08 63.5 94 47.9
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 1.8e-08 63.5 81 50.6
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 1.8e-08 63.5 73 50.7
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.8e-08 63.5 81 54.3
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.8e-08 63.5 114 43.0
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.8e-08 63.5 93 47.3
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.3e-08 63.2 78 52.6
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 3.1e-08 62.8 80 47.5
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 4.0e-08 62.4 92 46.7
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 5.2e-08 62.0 101 43.6
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 5.2e-08 62.0 85 50.6
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 5.2e-08 62.0 74 45.9
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 6.8e-08 61.6 79 48.1
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 6.8e-08 61.6 76 48.7
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 6.8e-08 61.6 101 40.6
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 8.9e-08 61.2 99 42.4
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 8.9e-08 61.2 92 43.5
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 8.9e-08 61.2 72 52.8
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 1.2e-07 60.8 95 46.3
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.2e-07 60.8 95 46.3
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.5e-07 60.5 78 47.4
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 1.5e-07 60.5 95 44.2
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.6e-07 59.7 100 40.0
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 4.4e-07 58.9 80 45.0
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 4.4e-07 58.9 73 46.6
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 7.5e-07 58.2 74 47.3
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 7.5e-07 58.2 77 46.8
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 7.5e-07 58.2 77 46.8
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 9.8e-07 57.8 76 46.1
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.7e-06 57.0 157 36.3
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 2.9e-06 56.2 83 44.6
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 2.9e-06 56.2 96 38.5
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 3.7e-06 55.8 85 40.0


User provided reference genes

Program Settings