Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 2129.8 1097 100.0
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1890.9 1094 89.1
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1890.5 1094 89.2
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1594.3 1133 73.6
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1546.9 930 87.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1537.3 1130 71.6
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1527.7 1123 71.1
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1512.3 1134 70.4
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1512.3 1107 71.8
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1508.8 1126 70.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1498.8 1129 70.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1128 70.3
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1490.3 1132 70.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1485.7 1127 69.1
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1484.5 1130 69.4
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1481.5 1143 68.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1481.1 1122 69.8
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1476.1 1125 68.9
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1473.8 1127 68.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1471.8 1128 69.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1471.1 1104 70.3
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1468.0 1139 68.5
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1467.2 1107 70.1
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1464.9 1147 68.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1464.5 1115 69.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1461.4 1106 70.0
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1460.7 1122 68.5
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1459.1 1115 69.1
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1452.2 1150 67.8
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1451.8 1122 68.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1449.9 1124 68.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1442.9 1127 68.7
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1442.2 1119 68.8
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1439.9 1132 68.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1437.9 1104 68.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1437.2 1123 68.4
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1436.8 1125 67.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1425.6 1103 68.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1421.8 1115 67.8
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1411.4 1136 67.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1409.8 1140 68.3
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1404.8 1109 67.8
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1403.3 1107 68.0
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1402.5 1127 66.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1401.7 1135 68.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1386.3 1131 65.3
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1380.9 1137 66.0
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1370.9 1135 65.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1076 69.0
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1354.0 1125 64.4
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1352.4 1135 64.1
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1345.5 1123 64.0
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1343.6 1123 64.1
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1339.7 1125 64.0
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1339.3 1128 64.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1336.6 1134 63.6
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1329.3 1139 63.7
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1327.8 1088 65.4
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1327.4 1090 66.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1324.7 1131 63.4
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1323.1 1089 64.6
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1321.2 1128 63.3
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1320.1 1137 63.5
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1318.5 1090 64.9
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1317.0 1095 64.7
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1313.5 1173 61.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1312.4 1089 66.2
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1310.4 1134 63.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1303.1 1150 62.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1302.3 1105 64.1
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1296.6 1133 63.4
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1283.1 1099 63.5
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1278.8 1115 63.8
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1275.4 1105 62.5
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1271.5 1079 63.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1269.2 1056 64.7
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1268.4 1119 61.9
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1258.8 1079 63.2
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1251.5 1079 63.2
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1246.1 1081 62.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1242.6 1116 60.8
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1238.4 1080 62.7
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1237.2 1068 62.7
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1233.8 1074 61.9
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1211.1 1004 65.6
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1204.1 912 68.5
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1198.0 912 68.3
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1187.2 1067 60.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1183.7 1263 53.7
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1157.9 1111 59.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1136.3 1018 61.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1134.0 1067 56.5
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1120.5 1074 56.3
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1105.5 1078 57.4
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1097.8 934 62.7
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1082.4 1068 57.1
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1076.6 1347 49.5
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1075.1 1115 55.6
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 4.2e-289 998.4 924 60.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.2e-286 990.3 1017 56.9
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.2e-270 937.2 1033 53.6
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 7.0e-268 927.9 855 62.5
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.6e-238 829.7 794 60.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.7e-227 793.1 1075 42.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.1e-226 788.9 1127 41.7
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 9.6e-225 784.6 1121 42.3
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.1e-223 779.6 1126 41.9
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.4e-221 771.5 1118 40.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.5e-219 766.1 776 57.3
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.8e-218 763.8 874 53.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 3.9e-218 762.7 659 60.8
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.6e-217 758.8 877 53.0
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 4.9e-213 745.7 957 49.4
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-202 710.7 646 61.6
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.4e-196 691.0 1042 39.8
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.8e-194 684.1 705 55.5
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.8e-184 649.4 520 65.0
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-172 611.3 420 76.2
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 7.2e-172 609.0 420 75.7
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 9.8e-169 598.6 523 61.2
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 3.7e-152 543.5 522 57.9
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.7e-133 481.5 410 65.9
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 2.3e-125 454.5 445 57.5
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-119 435.6 344 65.7
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.4e-103 381.3 668 39.8
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 7.1e-103 379.8 338 60.7
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.7e-102 377.9 227 78.9
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.1e-98 365.9 817 32.6
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 3.8e-88 330.9 351 52.1
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.6e-86 325.5 185 82.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.3e-82 310.5 322 55.9
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 9.4e-79 299.7 230 71.3
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.0e-69 268.1 1064 24.9
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.7e-67 261.2 503 36.8
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.2e-65 256.1 193 71.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.6e-65 255.8 140 87.9
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.6e-65 255.0 1254 23.0
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.0e-64 253.1 195 63.1
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 8.5e-64 250.0 140 87.1
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.2e-63 248.1 146 82.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 2.7e-57 228.4 245 51.8
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.7e-54 218.4 254 48.4
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.3e-51 209.5 508 33.5
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 2.2e-51 208.8 119 85.7
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.2e-51 208.8 161 70.8
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.2e-51 208.8 161 70.8
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 9.1e-50 203.4 116 85.3
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.5e-49 201.4 119 82.4
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-48 198.7 132 80.3
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 7.5e-44 183.7 140 71.4
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.2e-41 176.4 146 61.6
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.7e-41 175.3 132 73.5
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 2.9e-40 171.8 129 71.3
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 4.0e-37 161.4 82 95.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.0e-36 159.1 83 90.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 7.0e-34 150.6 182 44.0
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 9.2e-34 150.2 110 69.1
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 4.6e-33 147.9 1130 19.8
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 7.8e-33 147.1 82 84.1
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.1e-31 143.3 112 71.4
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.2e-29 134.4 88 84.1
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.6e-28 132.1 191 48.2
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.9e-26 125.9 117 55.6
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.9e-24 118.2 150 43.3
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 6.6e-24 117.5 134 47.8
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.5e-23 116.3 119 57.1
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.9e-23 115.9 162 48.1
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.2e-22 113.2 112 55.4
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.8e-21 109.4 85 60.0
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-18 99.8 95 56.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.6e-17 94.7 102 51.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.3e-15 88.6 84 52.4
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.7e-11 76.3 80 55.0
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 9.2e-10 70.5 59 67.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.3e-08 65.9 43 69.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 7.3e-07 60.8 45 64.4


User provided reference genes

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