Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 3.1e-154 548.5 290 100.0
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 4.2e-63 245.7 230 62.2
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.4e-58 230.7 231 58.4
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.3e-55 219.5 231 55.4
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 1.6e-54 217.2 224 57.6
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 3.4e-20 103.2 264 36.7
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 8.4e-19 98.6 226 37.2
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.2e-18 96.3 202 40.6
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 7.1e-18 95.5 249 36.5
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.3e-16 91.3 208 40.4
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.7e-16 90.9 240 36.2
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.5e-15 87.8 252 44.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.5e-15 87.8 166 39.2
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 3.3e-15 86.7 140 44.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 4.3e-15 86.3 210 36.2
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 7.3e-15 85.5 126 44.4
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.1e-13 81.6 246 41.9
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.1e-13 81.6 230 37.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 4.0e-13 79.7 148 41.2
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.2e-12 78.2 94 50.0
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.5e-12 77.8 140 44.3
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.0e-12 77.4 148 40.5
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 2.0e-12 77.4 224 36.2
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 2.6e-12 77.0 226 34.5
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 9.9e-12 75.1 141 40.4
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 9.9e-12 75.1 215 36.3
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.3e-11 74.7 136 41.9
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 2.9e-11 73.6 96 52.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 2.9e-11 73.6 214 32.2
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 3.8e-11 73.2 257 37.0
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 3.8e-11 73.2 84 48.8
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 3.8e-11 73.2 100 47.0
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 6.4e-11 72.4 150 40.7
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 8.4e-11 72.0 107 50.5
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 8.4e-11 72.0 133 45.1
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 8.4e-11 72.0 231 30.7
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 8.4e-11 72.0 152 40.8
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.4e-10 71.2 150 44.7
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.9e-10 70.9 140 37.9
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 1.9e-10 70.9 218 34.4
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 2.4e-10 70.5 227 37.0
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 3.2e-10 70.1 134 38.8
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 3.2e-10 70.1 220 32.3
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 5.4e-10 69.3 184 33.2
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 5.4e-10 69.3 249 30.5
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 5.4e-10 69.3 99 43.4
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 9.3e-10 68.6 182 33.0
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 9.3e-10 68.6 134 38.8
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 2.1e-09 67.4 162 39.5
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 3.5e-09 66.6 108 46.3
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 3.5e-09 66.6 137 42.3
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 4.6e-09 66.2 134 38.1
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.6e-09 66.2 211 33.6
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 6.0e-09 65.9 252 31.0
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 7.9e-09 65.5 167 38.3
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 7.9e-09 65.5 249 28.1
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.0e-08 65.1 92 42.4
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.0e-08 65.1 146 40.4
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.8e-08 64.3 214 32.2
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 2.3e-08 63.9 225 30.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.0e-08 63.5 96 45.8
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.0e-08 63.5 77 46.8
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 3.0e-08 63.5 153 41.8
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 3.9e-08 63.2 226 31.0
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 3.9e-08 63.2 118 44.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 5.1e-08 62.8 129 38.8
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 5.1e-08 62.8 251 36.7
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 8.7e-08 62.0 129 39.5
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.1e-07 61.6 142 44.4
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.1e-07 61.6 142 44.4
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.5e-07 61.2 133 41.4
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.9e-07 60.8 80 41.2
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.9e-07 60.8 147 35.4
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.9e-07 60.8 116 41.4
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 2.5e-07 60.5 107 44.9
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 2.5e-07 60.5 144 36.1
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 2.5e-07 60.5 127 39.4
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 4.3e-07 59.7 135 40.7
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 7.4e-07 58.9 172 30.8
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.4e-07 58.9 234 30.3
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 9.6e-07 58.5 109 43.1
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 1.3e-06 58.2 91 40.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.6e-06 57.8 226 29.2
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 2.1e-06 57.4 140 35.0
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.1e-06 57.4 243 31.7
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 2.8e-06 57.0 134 37.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 3.7e-06 56.6 215 30.7
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 3.7e-06 56.6 234 29.5
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 4.8e-06 56.2 205 31.7
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 6.2e-06 55.8 187 32.6
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 6.2e-06 55.8 98 43.9


User provided reference genes

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