Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 4.8e-137 491.1 242 100.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.4e-122 441.4 242 88.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.2e-100 367.9 245 74.7
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.2e-98 363.6 245 73.9
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.5e-98 363.2 245 74.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.5e-98 363.2 245 74.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.3e-85 318.9 242 64.0
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 7.6e-82 307.8 242 61.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.9e-81 305.8 232 63.4
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.9e-81 305.8 241 61.8
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 4.9e-81 305.1 213 69.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.1e-80 301.2 233 63.5
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 2.7e-79 299.3 234 62.0
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 4.6e-79 298.5 234 62.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 6.0e-79 298.1 242 60.7
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 7.9e-79 297.7 243 62.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.3e-78 297.0 242 59.1
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.7e-78 296.6 242 60.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.3e-78 296.2 242 59.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.0e-78 295.8 243 60.5
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.3e-77 291.2 242 59.1
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 9.6e-77 290.8 235 59.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.6e-76 288.9 242 59.1
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 4.8e-76 288.5 235 58.7
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 6.2e-76 288.1 242 58.7
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 8.1e-76 287.7 242 58.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 6.9e-75 284.6 236 60.6
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.0e-74 283.1 233 58.8
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.8e-74 281.6 209 70.3
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.7e-73 280.0 231 58.0
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.9e-73 278.5 242 56.2
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 6.4e-73 278.1 242 58.7
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.2e-72 275.8 236 59.3
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.7e-71 272.7 231 57.6
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.3e-70 270.4 231 57.1
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.8e-70 270.0 231 57.1
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.7e-70 267.7 242 55.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.5e-69 266.2 241 54.4
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.3e-68 263.8 242 52.9
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.3e-68 263.8 200 62.0
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 4.8e-68 261.9 235 51.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.2e-68 261.5 243 54.7
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.1e-67 260.8 243 54.7
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 6.9e-67 258.1 240 52.9
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.5e-66 256.9 241 54.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.0e-66 256.5 226 55.3
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.0e-66 256.5 242 54.1
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-66 255.8 242 52.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 7.6e-66 254.6 244 54.1
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.3e-65 253.8 248 51.6
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.3e-65 253.8 231 52.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 8.4e-65 251.1 213 59.2
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 4.2e-64 248.8 232 52.6
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.6e-63 246.9 240 54.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.0e-62 244.2 231 48.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-62 243.0 242 52.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-62 243.0 242 52.1
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.9e-62 242.3 234 50.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.9e-62 242.3 242 52.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.9e-62 242.3 240 50.4
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.1e-62 241.9 242 52.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.1e-62 241.9 242 51.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 6.7e-62 241.5 233 54.1
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.7e-62 241.1 241 51.0
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.9e-61 240.0 241 51.0
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.5e-61 239.6 242 49.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 5.7e-61 238.4 226 48.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 7.4e-61 238.0 241 50.6
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.3e-60 237.3 233 51.5
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.7e-60 235.7 232 49.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.2e-60 235.0 233 49.4
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.4e-59 233.8 231 48.9
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.1e-59 232.6 235 49.8
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.1e-59 232.3 232 49.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 6.9e-59 231.5 217 51.2
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.0e-59 231.1 214 50.9
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 9.0e-59 231.1 234 51.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.5e-58 230.3 240 49.2
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.4e-58 229.2 227 49.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 4.5e-58 228.8 242 48.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.5e-58 228.8 220 52.3
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.0e-57 227.6 242 48.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.7e-57 226.9 235 48.1
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.9e-57 226.1 197 55.3
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.0e-57 225.3 237 50.6
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 8.4e-57 224.6 232 50.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.1e-56 224.2 240 48.8
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.9e-56 223.4 235 47.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.5e-56 223.0 242 48.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 3.2e-56 222.6 236 48.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.2e-55 220.7 200 50.5
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.2e-55 220.7 235 48.9
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 2.1e-55 219.9 246 48.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.1e-55 218.4 233 45.5
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.8e-54 216.9 244 49.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.3e-54 216.5 214 49.1
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.3e-54 216.5 246 45.9
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.9e-54 215.7 232 47.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 5.1e-54 215.3 232 45.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.3e-53 212.6 219 49.3
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 7.4e-53 211.5 243 46.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.2e-52 209.9 236 46.6
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 2.8e-52 209.5 235 46.4
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 6.3e-52 208.4 221 48.0
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.1e-51 206.1 241 46.1
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 4.1e-51 205.7 154 59.7
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.6e-50 203.0 233 45.1
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.5e-50 202.2 233 46.4
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.5e-50 202.2 233 46.4
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 5.9e-50 201.8 233 45.1
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 7.7e-50 201.4 233 45.9
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.0e-49 201.1 233 45.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.0e-49 201.1 233 45.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.3e-49 200.7 223 44.8
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.2e-49 199.9 233 45.5
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 6.5e-49 198.4 233 46.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.2e-48 196.1 154 59.7
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 7.2e-48 194.9 236 44.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.2e-47 194.1 242 44.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.7e-47 193.0 210 45.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 6.1e-47 191.8 233 43.3
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.4e-46 190.7 233 43.3
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.8e-46 190.3 234 43.6
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 5.1e-46 188.7 182 48.9
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.5e-45 187.2 233 44.6
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.0e-45 186.8 232 43.1
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.4e-45 184.9 194 47.4
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 4.8e-44 182.2 216 42.1
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 6.3e-44 181.8 229 41.9
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 6.3e-44 181.8 213 44.6
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.4e-43 180.6 232 43.5
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.8e-43 180.3 213 44.6
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.4e-43 179.9 243 42.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.4e-42 176.0 152 54.6
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.4e-42 176.0 210 39.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 5.9e-42 175.3 232 42.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.0e-41 174.5 165 49.7
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.3e-41 174.1 178 48.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.9e-41 172.9 154 51.9
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 8.5e-41 171.4 218 39.0
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 8.5e-41 171.4 239 36.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.4e-40 170.6 210 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 7.2e-40 168.3 235 37.9
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.7e-39 166.4 147 53.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 3.6e-39 166.0 227 39.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 5.1e-38 162.2 121 60.3
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.5e-37 160.6 215 40.9
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.3e-37 159.5 237 39.7
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.3e-37 159.5 237 39.7
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-36 157.1 242 40.5
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 5.3e-35 152.1 217 36.4
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 9.1e-35 151.4 166 47.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.7e-34 148.3 221 40.7
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.9e-33 146.4 230 34.8
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.0e-33 145.6 146 50.7
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 6.5e-33 145.2 118 59.3
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 8.0e-31 138.3 191 35.1
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 6.7e-30 135.2 139 44.6
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.7e-26 123.2 113 54.9
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.5e-25 118.2 210 37.1
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.0e-22 109.4 113 47.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 5.2e-22 109.0 80 62.5
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 7.5e-21 105.1 89 56.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.8e-20 102.4 92 48.9
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.8e-19 100.5 88 53.4
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.8e-19 100.5 227 32.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 3.1e-19 99.8 143 42.7
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.1e-19 98.2 92 48.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.1e-19 98.2 145 40.7
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.5e-18 96.3 127 43.3
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 6.5e-17 92.0 78 52.6
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 101 43.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 2.7e-15 86.7 100 44.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 6.8e-14 82.0 80 47.5
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.5e-13 80.9 149 28.2
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 4.9e-12 75.9 99 36.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 4.5e-10 69.3 78 39.7
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 5.0e-09 65.9 48 58.3
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 5.6e-08 62.4 62 58.1


User provided reference genes

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