Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 0.0e+00 1295.8 678 100.0
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 0.0e+00 1080.5 716 79.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.6e-310 1068.9 692 80.6
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.5e-308 1062.4 692 80.3
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.5e-207 726.9 703 57.2
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 8.9e-205 717.6 704 56.7
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 1.5e-204 716.8 704 58.1
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 2.1e-201 706.4 714 56.2
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.9e-200 702.2 714 55.2
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 2.5e-199 699.5 693 56.3
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 2.8e-198 696.0 699 56.7
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 5.2e-197 691.8 695 55.8
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.2e-196 690.6 705 56.3
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 3.7e-195 685.6 701 55.8
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.6e-193 680.2 730 53.7
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.1e-189 667.5 703 53.9
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 1.5e-188 663.7 693 54.1
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.6e-188 662.9 697 55.1
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 3.4e-188 662.5 704 54.1
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 6.4e-187 658.3 696 53.3
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 6.4e-187 658.3 676 56.1
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.9e-186 656.8 697 53.7
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 3.2e-186 656.0 727 52.4
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 7.1e-186 654.8 727 53.2
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 9.3e-186 654.4 696 53.4
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 9.3e-186 654.4 694 53.2
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 1.6e-185 653.7 699 53.9
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 2.7e-185 652.9 695 54.0
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 4.6e-185 652.1 738 51.9
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 1.0e-184 651.0 702 53.1
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 1.0e-184 651.0 695 53.7
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.7e-184 650.2 599 58.3
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 5.6e-183 645.2 724 52.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 7.3e-183 644.8 700 52.4
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 2.1e-182 643.3 600 58.8
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.8e-182 642.9 695 52.7
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 6.9e-181 638.3 727 51.6
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 9.0e-181 637.9 699 51.9
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 4.5e-180 635.6 703 53.1
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 5.8e-180 635.2 692 52.5
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 1.7e-179 633.6 698 52.0
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.9e-179 632.9 700 51.4
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 8.4e-179 631.3 693 53.4
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 1.4e-178 630.6 708 50.6
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.9e-178 630.2 719 51.6
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 2.4e-178 629.8 611 55.6
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 2.7e-177 626.3 698 51.3
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.0e-176 624.4 709 49.8
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 3.3e-175 619.4 627 55.5
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 3.3e-175 619.4 704 50.7
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 1.2e-172 610.9 639 53.4
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.6e-172 609.8 777 48.0
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 9.9e-172 607.8 639 53.1
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 4.9e-171 605.5 637 52.4
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.1e-170 604.4 713 49.6
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 2.4e-170 603.2 692 50.4
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 3.2e-170 602.8 705 49.8
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.2e-169 600.9 713 49.6
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 2.1e-169 600.1 696 48.6
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 2.1e-169 600.1 703 49.8
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 3.5e-169 599.4 697 50.9
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 4.6e-169 599.0 697 51.1
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 6.0e-169 598.6 710 50.0
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.3e-168 597.4 739 47.5
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 1.8e-168 597.0 742 49.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 3.0e-168 596.3 607 53.2
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 3.9e-168 595.9 702 49.7
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 5.1e-168 595.5 633 51.3
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 1.1e-167 594.3 626 52.2
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 1.9e-167 593.6 698 49.1
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 7.4e-167 591.7 643 51.9
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 9.6e-167 591.3 733 48.6
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.3e-166 590.9 646 52.0
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 2.8e-166 589.7 607 52.6
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 2.8e-166 589.7 607 52.6
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 8.1e-166 588.2 607 52.7
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 5.8e-164 582.0 630 51.4
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 5.8e-164 582.0 691 49.9
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 3.2e-162 576.2 696 49.0
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 2.8e-158 563.1 613 51.7
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 6.3e-158 562.0 697 49.4
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.1e-157 561.2 580 52.4
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.1e-157 561.2 607 51.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.8e-157 560.5 694 47.8
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 4.5e-156 555.8 696 48.6
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 6.3e-150 535.4 668 47.3
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 3.4e-148 529.6 691 46.6
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 6.5e-147 525.4 699 46.4
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 8.5e-147 525.0 695 46.3
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 2.9e-139 500.0 724 45.0
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 4.7e-137 492.7 828 41.5
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 2.2e-134 483.8 770 41.2
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.2e-132 478.0 643 45.6
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 4.2e-130 469.5 551 51.2
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 9.1e-125 451.8 576 46.0
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 3.7e-118 429.9 671 42.3
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 7.0e-117 425.6 378 57.9
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 6.4e-102 375.9 718 37.0
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.3e-99 367.5 300 61.0
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.1e-88 332.0 292 58.6
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 3.7e-86 323.6 293 58.7
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.9e-82 311.2 377 51.2
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 1.8e-80 304.7 464 42.0
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 5.8e-79 299.7 569 37.1
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 4.2e-61 240.4 686 29.7
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 7.1e-61 239.6 870 27.5
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.8e-51 208.4 547 28.9
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 8.4e-46 189.5 246 47.2
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 1.1e-45 189.1 128 72.7
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 3.9e-43 180.6 980 24.1
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 4.8e-33 147.1 197 46.2
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.1e-24 119.4 96 63.5
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 9.7e-18 96.3 68 67.6
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 3.3e-10 71.2 78 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.3e-09 69.3 143 35.0
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 2.0e-07 62.0 381 26.8


User provided reference genes

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