Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 1.6e-146 523.1 331 100.0
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 1.4e-91 340.5 331 64.0
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 2.5e-91 339.7 331 61.9
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 2.2e-79 300.1 331 57.1
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 2.2e-76 290.0 331 57.1
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 1.6e-45 187.6 322 41.9
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 2.5e-43 180.3 338 39.6
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 1.4e-38 164.5 317 37.9
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 1.9e-38 164.1 319 45.5
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 9.2e-38 161.8 247 44.9
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.2e-37 161.4 308 38.0
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 3.5e-37 159.8 320 37.8
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.3e-36 157.9 326 38.3
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 1.7e-36 157.5 318 38.4
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.0e-36 156.8 326 38.0
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 6.6e-36 155.6 315 37.1
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 8.6e-36 155.2 319 37.9
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 5.6e-35 152.5 326 38.0
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 2.8e-34 150.2 248 43.5
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 8.1e-34 148.7 328 38.1
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 6.8e-33 145.6 320 36.6
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.6e-32 143.7 358 34.6
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.6e-32 143.7 358 34.6
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 8.3e-31 138.7 331 35.3
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 3.2e-30 136.7 351 35.3
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 5.4e-30 136.0 335 35.2
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 5.4e-30 136.0 190 42.1
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 7.1e-30 135.6 194 43.8
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 9.2e-30 135.2 349 33.8
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 4.6e-29 132.9 316 34.2
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 2.5e-27 127.1 301 41.2
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 7.3e-27 125.6 314 36.0
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 1.6e-26 124.4 305 33.4
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 3.1e-25 120.2 238 36.6
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 4.0e-25 119.8 326 33.1
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 5.2e-25 119.4 305 32.8
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 1.5e-24 117.9 327 39.4
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.0e-24 117.5 319 32.0
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 5.8e-24 115.9 327 39.1
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 2.2e-23 114.0 305 33.4
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 4.9e-23 112.8 322 32.3
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 2.4e-22 110.5 193 44.0
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 3.2e-22 110.2 234 37.6
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 4.1e-22 109.8 300 34.3
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 1.2e-21 108.2 309 40.1
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 4.6e-21 106.3 294 33.3
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 6.0e-21 105.9 173 42.2
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 7.8e-21 105.5 173 42.2
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 1.7e-20 104.4 272 37.9
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.7e-20 104.4 318 34.0
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.3e-20 104.0 174 42.5
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 3.0e-20 103.6 229 33.6
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 3.9e-20 103.2 141 46.1
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 6.6e-20 102.4 227 33.0
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 1.9e-19 100.9 317 31.2
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 2.5e-19 100.5 326 38.7
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 4.3e-19 99.8 236 33.9
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 4.3e-19 99.8 322 40.1
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 9.6e-19 98.6 230 33.5
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 1.6e-18 97.8 316 37.7
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 2.8e-18 97.1 348 34.2
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 1.1e-17 95.1 294 31.3
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 1.1e-17 95.1 302 29.8
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 1.4e-17 94.7 331 35.6
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 2.4e-17 94.0 170 40.0
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 4.0e-17 93.2 181 34.8
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 1.5e-16 91.3 162 40.1
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.5e-16 91.3 248 37.1
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 2.0e-16 90.9 117 48.7
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.7e-15 87.8 148 41.9
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 6.4e-15 85.9 133 43.6
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 8.4e-15 85.5 299 29.4
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 1.1e-14 85.1 132 46.2
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 1.9e-14 84.3 208 34.1
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 5.4e-14 82.8 319 30.7
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 5.4e-14 82.8 190 38.4
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 5.4e-14 82.8 174 40.2
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 7.1e-14 82.4 216 33.3
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 7.1e-14 82.4 231 32.0
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 2.1e-13 80.9 243 31.7
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 4.6e-13 79.7 294 27.6
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 6.0e-13 79.3 221 31.2
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 1.3e-12 78.2 299 33.4
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 8.7e-12 75.5 315 31.4
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 8.7e-12 75.5 285 28.4
Sopen10g003690 Solanum pennellii HOM05D009485 ORTHO05D006259 1.1e-11 75.1 312 34.3
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 2.5e-11 73.9 291 25.8
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 3.3e-11 73.6 142 36.6
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 9.6e-11 72.0 105 45.7
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 3.6e-10 70.1 205 36.6
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 4.8e-10 69.7 105 44.8
PSO104G0025 Papaver somniferum HOM05D006785 ORTHO05D006259 1.1e-09 68.6 102 41.2
Peaxi162Scf00035g00291 Petunia axillaris HOM05D009485 ORTHO05D006259 1.8e-09 67.8 241 32.0
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 5.3e-09 66.2 189 38.1
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 5.3e-09 66.2 164 37.2
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 5.3e-09 66.2 238 31.5
CAN.G585.40 Capsicum annuum HOM05D009485 ORTHO05D006259 9.0e-09 65.5 128 42.2
Phvul.006G033700 Phaseolus vulgaris HOM05D067041 ORTHO05D020454 1.5e-08 64.7 96 40.6
Cc05_g09420 Coffea canephora HOM05D009485 ORTHO05D006259 2.0e-08 64.3 192 34.9
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 4.5e-08 63.2 224 29.9
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 5.8e-08 62.8 219 31.1
Duzib187G1417 Durio zibethinus HOM05D006785 ORTHO05D006259 7.6e-08 62.4 130 38.5
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 9.9e-08 62.0 191 32.5
BraA10t42785Z Brassica rapa HOM05D006785 ORTHO05D006259 1.3e-07 61.6 217 29.0
PGSC0003DMG400021282 Solanum tuberosum HOM05D009485 ORTHO05D006259 2.9e-07 60.5 203 34.0
HanXRQChr08g0227971 Helianthus annuus HOM05D009485 ORTHO05D006259 6.4e-07 59.3 135 34.8
Aqoxy4G00148 Aquilegia oxysepala HOM05D006785 ORTHO05D006259 8.4e-07 58.9 131 38.2
Lsat_1_v5_gn_6_18081 Lactuca sativa HOM05D009485 ORTHO05D006259 1.1e-06 58.5 315 31.1
Oeu020927.1 Olea europaea HOM05D009485 ORTHO05D006259 1.4e-06 58.2 90 42.2
Solyc10g007780.3 Solanum lycopersicum HOM05D009485 ORTHO05D006259 1.4e-06 58.2 163 33.7
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 1.9e-06 57.8 195 32.3
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 1.9e-06 57.8 190 31.6
Migut.M00503 Erythranthe guttata HOM05D009485 ORTHO05D006259 1.9e-06 57.8 224 32.6
TPR.G15576 Trifolium pratense HOM05D021759 ORTHO05D020454 2.4e-06 57.4 224 26.3
Nitab4.5_0002027g0170 Nicotiana tabacum HOM05D009485 ORTHO05D006259 4.2e-06 56.6 212 31.1
BcaB06g29269 Brassica carinata HOM05D006785 ORTHO05D006259 7.1e-06 55.8 78 42.3
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 7.1e-06 55.8 156 31.4
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 7.1e-06 55.8 212 30.7


User provided reference genes

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