Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 3561.9 1819 100.0
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 3211.4 1821 89.9
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 3171.7 1823 89.0
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 3122.4 1889 85.3
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 3055.8 1823 86.4
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2599.3 1876 73.0
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2588.1 1844 73.9
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2559.3 1838 73.1
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2555.4 1859 72.2
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2550.8 1826 72.5
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2530.7 1833 73.0
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2529.6 1849 72.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2519.2 1812 73.0
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2514.2 1827 72.6
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2511.9 1830 72.3
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2509.9 1823 72.6
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2504.6 1829 72.2
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2503.8 1836 72.1
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2491.5 1840 72.1
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2490.7 1833 71.6
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2489.5 1840 71.6
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2483.4 1819 71.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2479.9 1862 70.7
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2474.9 1811 72.1
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2474.1 1841 71.2
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2474.1 1830 71.4
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2468.0 1833 71.4
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2459.1 1834 70.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2444.5 1814 71.0
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2440.6 1842 70.5
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2434.4 1814 70.8
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2433.3 1843 69.6
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2431.8 1831 69.8
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2429.8 1831 70.0
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2418.7 1831 69.6
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2417.9 1807 70.9
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2417.5 1830 69.7
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2408.6 1830 69.7
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2405.2 1846 69.7
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2403.6 1838 69.3
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2403.2 1846 69.7
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2399.8 1846 70.0
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2396.7 1826 69.7
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2368.6 1837 68.6
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2368.2 1837 68.5
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2357.8 1856 68.9
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2344.7 1849 68.5
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2327.4 1829 67.7
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2326.6 1908 66.4
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2323.9 1807 68.3
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2320.4 1837 68.3
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2317.3 1834 66.8
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2312.3 1840 67.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2311.2 1830 68.0
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2307.3 1834 66.6
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2306.2 1849 67.4
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2306.2 1849 67.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2302.7 1835 66.9
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2288.8 1796 68.4
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2241.5 1835 66.2
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2240.7 1825 66.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2220.7 1832 65.8
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2219.1 1822 66.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2214.9 1832 65.9
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2202.2 1820 66.4
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2193.7 1828 65.7
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2192.9 1827 65.5
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2187.5 1838 64.6
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2183.7 1823 64.9
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2179.4 1829 64.5
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2166.0 1736 66.4
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2153.6 1854 63.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2150.9 1833 64.0
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2146.7 1827 64.4
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2096.6 1818 63.3
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2092.8 1825 62.5
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2083.1 1831 62.5
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2072.0 1821 62.4
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2071.2 1823 63.3
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2067.4 1825 62.2
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2046.2 1828 61.2
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2045.4 1823 61.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2004.6 1830 60.8
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2002.6 1822 61.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1997.2 1765 62.2
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1987.6 1821 61.6
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1965.3 1828 60.6
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1949.9 1829 58.9
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1931.0 1866 57.9
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1924.1 1815 59.1
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1924.1 1817 59.1
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1924.1 1817 59.1
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1910.2 1836 58.3
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1870.9 1822 58.9
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1810.0 1841 54.7
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1762.3 1858 53.8
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1727.2 1370 67.2
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1673.3 1488 62.0
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1641.3 1699 54.3
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1615.9 1796 53.1
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1597.0 1342 64.8
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1593.9 1333 64.8
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1575.8 1217 69.2
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1563.5 1577 57.7
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1500.0 1372 61.3
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1447.2 1785 50.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1437.6 1305 60.8
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1378.6 1190 62.8
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1345.5 1989 43.5
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1237.2 1006 66.7
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1232.6 1105 62.7
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1219.5 1356 53.0
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1196.0 1840 41.8
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1188.3 1930 40.9
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1158.3 1956 39.9
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1156.0 1138 57.6
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1144.8 2006 39.0
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.4e-308 1063.9 871 65.1
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 2.1e-256 890.6 1379 41.7
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 2.8e-237 827.0 1478 38.6
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 8.5e-218 762.3 632 62.0
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 3.8e-210 736.9 522 73.9
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 8.8e-207 725.7 480 77.3
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 6.5e-186 656.4 609 59.3
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 3.7e-181 640.6 489 71.8
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 2.4e-180 637.9 464 71.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 2.6e-166 591.3 381 78.7
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.6e-163 582.0 622 53.1
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 4.3e-161 573.9 355 80.0
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 7.3e-161 573.2 571 58.1
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 3.0e-154 551.2 377 76.4
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 8.6e-154 549.7 427 65.1
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.1e-153 549.3 349 77.7
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-140 505.8 484 61.4
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 4.9e-133 480.7 390 67.2
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 4.9e-125 454.1 323 69.0
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-121 443.0 399 61.9
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 2.3e-114 418.7 433 56.6
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.1e-112 412.1 268 81.7
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 8.2e-112 410.2 260 80.0
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 4.0e-74 285.0 304 57.9
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 5.2e-74 284.6 303 57.8
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 7.5e-73 280.8 313 56.2
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-47 197.2 143 65.7
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 2.1e-43 183.0 122 76.2
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 4.6e-22 112.1 114 52.6
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 2.6e-17 96.3 711 21.0
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 3.4e-17 95.9 69 73.9
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 2.4e-15 89.7 96 52.1
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.4e-15 89.7 66 68.2
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.2e-15 89.0 70 67.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 5.1e-13 82.0 69 62.3
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.5e-12 80.5 39 84.6
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 1.5e-12 80.5 204 26.5
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 69 56.5
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.6e-11 77.0 112 43.8
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 8.1e-11 74.7 111 43.2
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.1e-07 64.3 187 28.3
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 5.5e-07 62.0 37 81.1
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.2e-06 60.8 72 54.2


User provided reference genes

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