Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 5.2e-31 137.1 71 100.0
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 9.5e-17 89.7 70 72.9
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.3e-13 79.3 52 73.1
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.3e-13 79.3 52 73.1
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.7e-13 79.0 48 79.2
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.7e-13 79.0 48 79.2
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.7e-13 79.0 48 79.2
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.7e-13 79.0 48 79.2
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.7e-13 77.8 48 77.1
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 4.9e-13 77.4 48 77.1
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.4e-13 77.0 48 77.1
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.4e-13 77.0 48 77.1
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 8.3e-13 76.6 63 60.3
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.1e-12 76.3 60 61.7
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 1.9e-12 75.5 49 71.4
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.9e-12 75.5 63 61.9
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.4e-12 75.1 49 73.5
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 4.1e-12 74.3 48 70.8
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 4.1e-12 74.3 63 57.1
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.1e-12 74.3 49 73.5
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 5.4e-12 73.9 62 58.1
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 5.4e-12 73.9 61 60.7
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 5.4e-12 73.9 52 65.4
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 7.1e-12 73.6 49 71.4
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 9.2e-12 73.2 62 58.1
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 9.2e-12 73.2 69 62.3
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 9.2e-12 73.2 67 58.2
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 9.2e-12 73.2 50 76.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.2e-11 72.8 50 74.0
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.6e-11 72.4 48 70.8
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.1e-11 72.0 45 75.6
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 2.1e-11 72.0 43 79.1
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 6.0e-11 70.5 66 56.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 6.0e-11 70.5 46 69.6
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 7.8e-11 70.1 61 55.7
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.0e-10 69.7 42 78.6
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.0e-10 69.7 48 66.7
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.3e-10 69.3 48 68.8
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.3e-10 69.3 59 61.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.7e-10 68.9 48 68.8
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.3e-10 68.6 67 56.7
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 3.9e-10 67.8 65 53.8
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 3.9e-10 67.8 43 72.1
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.9e-10 67.8 48 66.7
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 3.9e-10 67.8 48 66.7
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.1e-10 67.4 45 80.0
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 8.6e-10 66.6 60 56.7
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 8.6e-10 66.6 48 62.5
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.6e-10 66.6 65 55.4
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 8.6e-10 66.6 67 53.7
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 8.6e-10 66.6 48 64.6
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 8.6e-10 66.6 48 64.6
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.1e-09 66.2 60 55.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 1.1e-09 66.2 55 61.8
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 1.1e-09 66.2 54 61.1
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-09 66.2 68 51.5
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.5e-09 65.9 59 59.3
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.5e-09 65.9 48 62.5
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.5e-09 65.9 68 58.8
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.9e-09 65.5 55 61.8
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.5e-09 65.1 43 67.4
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.5e-09 65.1 59 55.9
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 3.3e-09 64.7 65 53.8
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 4.3e-09 64.3 67 50.7
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 5.6e-09 63.9 64 56.2
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 7.3e-09 63.5 48 64.6
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 9.5e-09 63.2 47 63.8
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.2e-08 62.8 49 57.1
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.2e-08 62.8 65 50.8
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.2e-08 62.8 49 61.2
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.2e-08 62.8 49 59.2
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.6e-08 62.4 48 60.4
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.6e-08 62.4 52 59.6
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.1e-08 62.0 55 58.2
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.6e-08 61.2 52 59.6
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 8.1e-08 60.1 51 60.8
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 8.1e-08 60.1 51 58.8
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.1e-07 59.7 65 46.2
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.4e-07 59.3 51 54.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.8e-07 58.9 58 51.7
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.4e-07 58.5 48 56.2
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 2.4e-07 58.5 51 58.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 3.1e-07 58.2 64 50.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 4.0e-07 57.8 42 64.3
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.2e-07 57.4 58 50.0
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.5e-06 55.8 40 67.5
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.5e-06 55.8 71 43.7
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 2.0e-06 55.5 56 53.6
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 3.4e-06 54.7 46 58.7
Os02g0715400 Oryza sativa ssp. japonica HOM05D027844 ORTHO05D037205 7.6e-06 53.5 50 52.0


User provided reference genes

Program Settings