Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 4.8e-160 567.8 284 100.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 2.1e-131 472.6 284 84.2
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.6e-129 465.7 287 83.6
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 3.1e-119 432.2 287 78.7
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 9.1e-103 377.5 264 70.1
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.0e-101 374.0 254 70.5
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 1.3e-101 373.6 283 66.4
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.7e-101 373.2 253 70.8
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 2.3e-101 372.9 269 69.9
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 5.0e-101 371.7 283 66.1
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 5.0e-101 371.7 255 71.4
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 8.6e-101 370.9 247 74.5
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.1e-100 370.5 252 70.2
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 1.2e-99 367.1 281 65.8
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.6e-99 366.7 252 71.8
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 8.0e-99 364.4 288 63.9
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 2.3e-98 362.8 272 68.4
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 3.0e-98 362.5 253 70.4
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 8.9e-98 360.9 255 71.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 8.9e-98 360.9 251 70.1
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 8.9e-98 360.9 257 69.6
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.5e-97 360.1 282 65.2
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 3.4e-97 359.0 253 70.4
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 3.4e-97 359.0 297 62.6
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 4.4e-97 358.6 285 66.0
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 5.7e-97 358.2 263 68.1
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 1.3e-96 357.1 246 70.7
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.7e-96 356.7 283 63.3
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.7e-96 356.7 255 70.2
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.7e-96 356.7 285 65.6
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 2.9e-96 355.9 267 67.4
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 4.9e-96 355.1 252 68.3
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 8.3e-96 354.4 248 71.0
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.4e-95 353.6 260 69.2
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 1.4e-95 353.6 250 69.2
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.4e-95 353.6 293 61.8
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 1.8e-95 353.2 282 64.2
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.4e-95 352.8 293 61.4
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 5.4e-95 351.7 264 67.0
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 5.4e-95 351.7 263 69.2
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 9.2e-95 350.9 254 69.3
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.6e-94 350.1 258 67.4
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 2.0e-94 349.7 254 67.3
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 2.7e-94 349.4 265 67.2
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 4.6e-94 348.6 279 63.8
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 4.6e-94 348.6 249 69.1
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 7.8e-94 347.8 258 67.4
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.3e-93 347.1 283 62.5
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.3e-93 347.1 265 66.0
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 2.3e-93 346.3 260 67.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 3.0e-93 345.9 258 66.3
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 3.0e-93 345.9 265 66.0
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.9e-93 345.5 266 66.2
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 3.9e-93 345.5 244 72.1
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 6.6e-93 344.7 290 60.7
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 1.9e-92 343.2 277 63.9
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.9e-92 343.2 251 68.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.9e-92 343.2 262 66.0
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 2.5e-92 342.8 294 59.9
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 2.5e-92 342.8 260 66.5
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 7.3e-92 341.3 265 63.8
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.5e-92 340.9 268 64.9
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 9.5e-92 340.9 251 66.1
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 9.5e-92 340.9 262 64.9
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 3.6e-91 339.0 264 63.3
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 6.2e-91 338.2 244 69.3
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 8.0e-91 337.8 244 69.3
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 1.4e-90 337.0 253 67.6
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.4e-90 337.0 247 67.6
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 5.2e-90 335.1 252 68.7
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 3.4e-89 332.4 279 62.4
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 2.4e-87 326.2 252 66.3
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.4e-87 326.2 227 69.6
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 3.2e-87 325.9 227 70.0
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 5.4e-87 325.1 254 64.2
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.6e-86 323.6 252 65.9
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.7e-85 320.1 256 64.8
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.1e-84 317.4 250 62.0
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.3e-84 315.8 281 59.4
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 3.3e-84 315.8 251 66.5
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 2.8e-83 312.8 226 69.0
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 2.3e-82 309.7 289 56.7
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.3e-82 309.7 269 60.6
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 4.0e-82 308.9 247 61.9
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 8.9e-82 307.8 251 62.2
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 8.9e-82 307.8 245 62.4
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.2e-81 307.4 269 60.2
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 2.6e-81 306.2 247 61.9
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 4.4e-81 305.4 220 67.3
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 2.9e-80 302.8 260 61.9
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.4e-79 300.4 251 62.2
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 1.4e-79 300.4 264 61.0
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 7.8e-78 294.7 239 62.3
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 3.9e-77 292.4 260 58.1
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 2.1e-75 286.6 190 74.7
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 6.0e-62 241.9 179 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 7.3e-60 235.0 262 48.9
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 9.9e-57 224.6 161 68.9
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 6.4e-56 221.9 266 45.9
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 8.4e-56 221.5 240 48.8
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 5.4e-55 218.8 299 43.1
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 6.2e-51 205.3 144 70.8
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.7e-48 197.2 290 39.7
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 2.1e-46 190.3 158 63.3
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.3e-43 181.0 158 59.5
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.5e-41 174.1 292 38.4
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 6.5e-40 168.7 251 41.0
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 3.7e-35 152.9 237 36.7
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 4.2e-31 139.4 108 64.8
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 1.5e-28 131.0 103 61.2
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.2e-25 121.3 160 47.5
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.6e-25 120.2 121 57.9
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 6.9e-18 95.5 102 52.0
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.6e-09 67.0 231 23.4
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.6e-09 67.0 231 23.4
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.7e-08 64.3 187 26.2
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 5.0e-08 62.8 272 23.5
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 5.0e-08 62.8 238 25.2
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 8.5e-08 62.0 114 32.5
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 9.4e-07 58.5 100 31.0
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 9.4e-07 58.5 100 31.0
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.2e-06 58.2 237 22.8
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.6e-06 57.8 118 28.8
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.6e-06 57.8 118 28.8
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 2.1e-06 57.4 190 24.7
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 2.7e-06 57.0 118 28.8
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 2.7e-06 57.0 118 28.8
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 2.7e-06 57.0 118 28.8
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 2.7e-06 57.0 100 31.0
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 4.7e-06 56.2 118 28.0
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 4.7e-06 56.2 118 28.8


User provided reference genes

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