Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 5.6e-206 720.7 361 100.0
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 3.1e-188 661.8 363 91.2
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.5e-187 659.4 361 90.0
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 2.6e-187 658.7 359 90.5
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 2.1e-181 639.0 361 88.4
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.6e-165 586.3 359 79.4
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 5.3e-164 581.3 360 78.6
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 5.3e-164 581.3 358 78.2
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.2e-163 580.1 351 80.6
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.5e-163 579.7 354 79.9
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 2.6e-163 578.9 356 78.9
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.0e-162 577.0 358 78.8
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 1.0e-162 577.0 357 78.7
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 1.3e-162 576.6 359 74.9
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.8e-162 575.1 358 78.5
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.8e-162 575.1 358 78.8
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 3.8e-162 575.1 354 77.7
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 5.0e-162 574.7 358 78.8
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 6.5e-162 574.3 356 76.1
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 6.5e-162 574.3 357 78.7
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 1.4e-161 573.2 356 77.8
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 3.2e-161 572.0 358 78.5
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 5.5e-161 571.2 353 78.2
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.1e-160 569.3 359 75.8
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 3.6e-160 568.5 355 78.9
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 4.6e-160 568.2 348 79.0
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 6.1e-160 567.8 357 76.2
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 7.9e-160 567.4 358 77.9
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.4e-159 566.6 359 76.9
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 1.8e-159 566.2 350 76.9
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 3.0e-159 565.5 349 77.9
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.9e-159 565.1 352 77.0
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 3.9e-159 565.1 361 75.3
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 5.1e-159 564.7 355 76.1
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 6.7e-159 564.3 350 76.0
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 8.8e-159 563.9 370 75.9
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 2.5e-158 562.4 351 77.2
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.5e-158 562.4 349 77.4
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 2.5e-158 562.4 350 76.9
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 4.3e-158 561.6 362 74.0
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 4.3e-158 561.6 353 77.3
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 5.7e-158 561.2 351 76.9
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 7.4e-158 560.8 365 75.1
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 1.7e-157 559.7 349 75.9
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.7e-157 559.7 365 74.5
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.7e-157 559.7 356 75.3
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.2e-157 559.3 365 74.5
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 2.2e-157 559.3 351 77.8
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 2.2e-157 559.3 351 76.9
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 2.8e-157 558.9 357 75.1
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 3.7e-157 558.5 352 76.1
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 4.8e-157 558.1 355 74.9
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.8e-156 556.2 362 73.5
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 1.8e-156 556.2 358 72.9
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.4e-156 555.8 351 76.4
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 2.4e-156 555.8 354 76.0
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 5.3e-156 554.7 358 72.9
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 5.3e-156 554.7 359 73.0
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 1.2e-155 553.5 350 76.0
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.5e-155 553.1 351 75.2
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 1.5e-155 553.1 355 74.4
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 2.0e-155 552.7 353 73.4
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.0e-155 552.7 351 75.2
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 2.6e-155 552.4 353 75.1
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.4e-155 552.0 357 73.7
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 4.5e-155 551.6 358 72.3
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 4.5e-155 551.6 350 75.1
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.0e-154 550.4 351 75.5
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 1.3e-154 550.1 353 73.1
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 1.7e-154 549.7 352 74.7
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 6.5e-154 547.7 355 73.5
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 1.1e-153 547.0 348 76.4
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.4e-153 546.6 352 74.7
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.4e-153 546.6 356 73.9
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.2e-152 543.5 347 76.1
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.2e-152 543.5 347 76.1
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 1.2e-152 543.5 339 76.7
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.6e-152 542.0 349 72.2
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 1.8e-151 539.7 348 73.0
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 1.8e-151 539.7 349 74.2
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 3.0e-151 538.9 365 71.8
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 5.1e-151 538.1 355 72.7
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 6.7e-151 537.7 352 73.0
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 2.6e-150 535.8 347 74.1
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 4.4e-150 535.0 351 72.6
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 5.7e-150 534.6 354 71.5
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 7.4e-150 534.3 355 72.1
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 7.4e-150 534.3 358 74.3
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 9.7e-150 533.9 355 71.5
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.7e-149 533.1 362 69.9
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 2.2e-149 532.7 347 74.9
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 4.8e-149 531.6 355 73.8
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.4e-148 530.0 350 73.7
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 3.1e-148 528.9 348 74.4
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 5.3e-148 528.1 393 69.0
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.6e-147 526.6 391 65.7
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.0e-147 526.2 347 74.1
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 2.6e-147 525.8 351 73.8
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 3.5e-147 525.4 354 70.9
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 5.9e-147 524.6 344 73.8
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 3.8e-146 521.9 358 71.8
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 3.0e-143 512.3 340 73.5
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 7.5e-142 507.7 375 67.2
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 3.1e-140 502.3 353 71.1
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 1.6e-139 500.0 358 69.3
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 1.0e-138 497.3 314 77.1
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 1.9e-137 493.0 364 68.1
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 1.6e-131 473.4 354 67.5
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 2.0e-131 473.0 340 66.2
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 4.7e-128 461.8 287 78.0
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 8.0e-128 461.1 333 67.0
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 3.4e-126 455.7 274 78.5
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 2.0e-123 446.4 357 61.6
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 1.0e-119 434.1 269 77.0
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.4e-119 433.7 351 63.5
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 1.5e-118 430.3 275 74.9
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.7e-115 419.5 270 74.1
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 1.3e-114 417.2 268 75.7
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.8e-112 409.5 268 73.5
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 2.9e-109 399.4 350 58.6
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.4e-108 397.1 235 80.4
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 1.6e-107 393.7 328 59.8
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.4e-103 380.6 338 57.4
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 2.6e-102 376.3 267 67.0
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 7.5e-102 374.8 255 72.2
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 3.7e-101 372.5 337 58.5
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 6.0e-99 365.2 282 63.8
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 3.3e-97 359.4 357 53.2
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.6e-96 357.1 366 52.5
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 8.6e-90 334.7 358 50.8
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.8e-87 327.0 360 51.4
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 1.1e-84 317.8 208 71.2
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 4.2e-84 315.8 350 50.0
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 3.9e-82 309.3 349 49.0
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.3e-73 279.6 235 63.0
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 7.6e-70 268.5 209 66.5
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 2.5e-65 253.4 167 70.7
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 4.6e-59 232.6 215 56.7
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 5.9e-54 215.7 195 57.4
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 3.1e-47 193.4 124 72.6
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 4.1e-47 193.0 131 71.0
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 4.7e-35 152.9 114 64.9
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 3.6e-27 126.7 188 42.0
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 8.2e-24 115.5 85 68.2
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 1.6e-22 111.3 70 71.4
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 1.9e-20 104.4 65 72.3
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 2.3e-18 97.4 63 69.8
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 2.3e-10 70.9 44 68.2
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 2.0e-09 67.8 81 49.4
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 4.4e-09 66.6 43 62.8


User provided reference genes

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