Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.4e-180 636.3 354 100.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.2e-147 526.9 337 84.0
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.1e-145 520.4 351 81.2
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.1e-143 511.5 342 82.5
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 3.4e-139 498.8 341 79.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 3.5e-112 409.1 343 64.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.3e-111 406.4 323 67.8
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.4e-108 396.4 339 64.9
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 5.3e-108 395.2 262 76.7
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.5e-107 393.7 261 75.5
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 5.8e-107 391.7 332 62.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 7.6e-107 391.3 252 77.4
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.0e-106 391.0 331 63.4
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.0e-106 391.0 256 75.8
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 8.4e-106 387.9 260 75.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.1e-105 387.5 302 67.9
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 3.2e-105 386.0 291 68.7
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.2e-105 385.6 364 59.9
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 4.2e-105 385.6 334 62.9
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 7.1e-105 384.8 253 75.9
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.2e-104 384.0 258 75.6
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.6e-104 383.6 292 68.8
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 2.7e-104 382.9 289 68.2
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.5e-104 382.5 277 72.2
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 4.6e-104 382.1 252 76.2
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.3e-103 380.6 294 68.4
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 3.9e-103 379.0 262 73.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 5.1e-103 378.6 286 69.6
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 6.7e-103 378.3 297 67.7
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.7e-103 377.9 262 73.3
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 8.7e-103 377.9 297 68.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 8.7e-103 377.9 250 76.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.1e-102 377.5 257 75.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.1e-102 377.5 332 63.3
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.5e-102 377.1 255 74.5
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.5e-102 377.1 261 72.4
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-102 376.7 251 72.9
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.5e-102 376.3 290 67.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 4.3e-102 375.6 343 61.8
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.3e-102 375.6 293 67.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 4.3e-102 375.6 258 73.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.6e-101 373.6 251 74.5
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.2e-101 373.2 255 74.5
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.2e-101 373.2 296 66.2
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.8e-101 372.9 260 73.1
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.8e-101 372.9 260 73.1
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.7e-101 372.5 254 72.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.8e-101 372.1 255 74.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.8e-101 372.1 253 73.5
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 6.3e-101 371.7 278 68.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 6.3e-101 371.7 255 72.9
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.2e-101 371.3 260 72.3
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 8.2e-101 371.3 253 73.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.1e-100 370.9 265 73.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.4e-100 370.5 345 59.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.4e-100 370.5 252 73.8
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.4e-100 370.5 280 66.8
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.8e-100 370.2 313 64.9
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.4e-100 369.8 332 60.8
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.1e-100 369.0 258 72.5
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.2e-99 367.5 256 71.9
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.2e-99 367.5 245 73.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.5e-99 367.1 270 69.3
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.6e-99 366.3 253 73.5
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 5.0e-98 362.1 351 59.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 8.5e-98 361.3 254 71.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.2e-97 359.4 282 66.0
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 4.2e-97 359.0 282 65.6
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 7.2e-97 358.2 249 72.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.1e-96 356.7 295 65.4
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.6e-96 355.5 256 69.5
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.0e-95 354.4 282 63.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.8e-95 353.6 354 58.5
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 5.1e-95 352.1 291 64.3
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 3.3e-94 349.4 316 60.4
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 7.4e-94 348.2 259 68.7
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.3e-93 347.4 289 63.3
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.7e-93 347.1 322 59.3
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 3.7e-93 345.9 305 61.6
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 3.7e-93 345.9 290 64.5
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 4.8e-93 345.5 261 67.4
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 6.3e-93 345.1 289 62.3
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 8.2e-93 344.7 292 63.7
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.1e-92 344.4 256 68.4
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.1e-92 344.4 260 67.3
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.1e-92 344.4 256 68.4
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.4e-92 344.0 325 58.5
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 3.1e-92 342.8 275 65.5
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 3.1e-92 342.8 275 65.1
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.3e-92 342.0 289 62.6
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.5e-91 340.5 257 67.3
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.3e-90 337.4 280 63.2
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.1e-84 315.8 250 63.6
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 4.5e-83 312.4 250 62.4
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.0e-82 311.2 254 61.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 2.9e-82 309.7 250 62.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.5e-81 306.6 287 57.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 3.6e-80 302.8 202 74.8
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 5.9e-75 285.4 202 71.3
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.0e-74 284.6 251 61.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.2e-73 279.6 290 51.7
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 4.2e-73 279.3 348 48.9
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.9e-66 256.5 269 51.3
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.8e-66 256.1 285 49.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 3.6e-64 249.6 303 46.9
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 6.1e-56 222.2 165 65.5
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 8.9e-55 218.4 249 47.4
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.5e-54 217.6 141 78.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.0e-51 207.2 230 49.6
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-49 201.4 188 56.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.8e-47 192.2 210 51.9
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.7e-45 187.6 180 57.8
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 7.0e-44 182.2 141 63.8
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.0e-43 180.6 148 65.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 7.5e-38 162.2 165 56.4
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 4.9e-37 159.5 112 72.3
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 7.0e-36 155.6 110 70.9
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.1e-34 149.4 184 48.9
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.6e-32 143.3 102 67.6
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.6e-32 143.3 183 49.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.9e-29 133.7 118 61.9
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.9e-29 133.7 138 52.9
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.9e-29 132.9 113 57.5
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.9e-28 131.0 109 61.5
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.0e-27 125.9 74 83.8
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.3e-26 124.0 245 32.2
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.5e-25 121.3 102 60.8
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.8e-23 114.4 88 67.0
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.9e-21 107.1 80 62.5
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 6.4e-21 105.9 71 70.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.9e-20 104.4 87 64.4
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 6.0e-19 99.4 108 50.9
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.3e-17 93.6 50 88.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.6e-16 90.1 99 57.6
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.0e-15 86.7 92 48.9
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.0e-15 86.7 55 78.2
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 2.0e-14 84.3 55 72.7
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.4e-14 83.2 181 34.3
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.6e-14 82.4 182 30.2
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.6e-14 82.4 147 36.1
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 7.8e-11 72.4 160 36.2
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.3e-09 67.0 68 52.9
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 3.3e-09 67.0 47 63.8
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 2.4e-07 60.8 62 53.2


User provided reference genes

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