Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 8.7e-304 1046.2 540 100.0
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 3.1e-245 851.7 494 88.3
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 1.0e-243 846.7 494 88.3
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 4.6e-220 768.1 466 86.7
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 2.9e-206 722.2 485 75.7
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 7.1e-205 717.6 484 76.9
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 7.8e-204 714.1 485 74.8
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 3.9e-203 711.8 485 74.6
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 8.7e-203 710.7 485 74.2
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 4.8e-201 704.9 486 73.0
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 7.6e-199 697.6 484 74.6
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.2e-198 696.0 485 74.0
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 3.8e-198 695.3 485 73.0
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 3.8e-198 695.3 485 73.0
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 8.4e-198 694.1 485 72.8
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 7.1e-197 691.0 481 74.0
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 9.3e-197 690.6 485 73.4
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 1.2e-196 690.3 484 75.0
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 1.2e-196 690.3 495 73.3
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 1.6e-196 689.9 484 73.3
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 2.3e-195 686.0 487 72.7
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 5.1e-195 684.9 484 72.3
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 6.7e-195 684.5 486 73.3
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 9.6e-194 680.6 488 72.1
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 1.1e-192 677.2 483 72.0
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 3.4e-191 672.2 485 72.2
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 3.8e-190 668.7 487 70.6
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 4.9e-190 668.3 485 71.1
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 6.4e-190 667.9 486 71.6
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 8.4e-190 667.5 485 70.7
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 5.5e-189 664.8 492 72.0
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.2e-188 663.7 484 70.9
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 1.6e-188 663.3 482 72.2
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 1.0e-187 660.6 481 71.5
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 1.3e-187 660.2 484 71.5
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 2.3e-187 659.4 484 72.3
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 3.9e-187 658.7 489 69.7
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 3.9e-187 658.7 481 71.7
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.1e-186 657.1 486 71.6
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 1.3e-185 653.7 485 71.5
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 8.2e-185 651.0 485 71.5
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 1.8e-184 649.8 483 71.2
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 1.8e-184 649.8 486 70.4
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 6.9e-184 647.9 486 71.0
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 1.5e-183 646.7 488 70.5
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 2.6e-183 646.0 484 67.4
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 1.0e-182 644.0 497 69.0
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.2e-182 642.9 492 70.1
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 8.4e-182 641.0 491 70.1
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 2.5e-181 639.4 484 65.7
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.2e-181 638.6 491 69.9
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 5.5e-181 638.3 484 67.1
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 1.3e-179 633.6 481 70.7
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 1.8e-179 633.3 484 67.1
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 3.0e-179 632.5 482 70.5
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 1.1e-178 630.6 484 66.9
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 1.5e-178 630.2 485 68.5
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 1.5e-178 630.2 489 68.9
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 1.9e-178 629.8 481 70.7
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 1.9e-178 629.8 481 70.7
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 1.9e-178 629.8 481 70.7
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 1.9e-178 629.8 481 70.1
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 3.3e-178 629.0 482 69.5
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 9.7e-178 627.5 482 70.5
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 1.6e-177 626.7 481 70.1
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 9.0e-176 620.9 487 69.0
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.2e-175 620.5 506 63.8
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 1.1e-173 614.0 484 67.6
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 2.5e-173 612.8 484 67.8
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 4.2e-173 612.1 485 66.0
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 1.2e-172 610.5 488 66.8
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 1.6e-172 610.1 511 65.8
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 6.1e-172 608.2 481 69.0
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 6.1e-172 608.2 487 68.2
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 7.9e-172 607.8 484 66.1
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 1.3e-171 607.1 431 71.5
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.3e-171 607.1 484 67.1
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 1.1e-168 597.4 508 64.2
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 1.8e-163 580.1 492 65.4
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 2.6e-162 576.2 463 66.7
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 2.2e-161 573.2 481 65.7
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 2.0e-154 550.1 485 61.9
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 6.3e-153 545.0 500 59.8
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 4.0e-147 525.8 484 61.8
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 4.8e-137 492.3 486 58.0
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 7.8e-119 431.8 320 72.5
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 9.8e-114 414.8 370 63.5
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 2.2e-113 413.7 521 46.6
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 1.1e-112 411.4 528 45.8
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 4.9e-105 386.0 319 60.8
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.6e-103 379.4 520 44.2
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 2.0e-98 364.0 304 66.1
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.1e-96 358.2 298 69.1
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 2.5e-93 347.1 495 38.6
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 1.2e-82 311.6 279 57.7
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.5e-82 309.7 511 39.3
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 6.0e-79 299.3 239 70.3
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 2.3e-78 297.4 277 54.9
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 2.8e-68 263.8 232 56.9
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 3.7e-68 263.5 158 79.1
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 6.2e-68 262.7 232 64.7
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.5e-66 258.1 232 64.2
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 1.0e-62 245.4 159 75.5
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 6.7e-62 242.7 172 66.9
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 5.7e-61 239.6 160 67.5
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 2.9e-57 227.3 206 57.3
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 3.6e-55 220.3 136 77.9
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 3.6e-55 220.3 232 56.0
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 4.3e-53 213.4 262 46.9
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.0e-49 202.2 243 54.7
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.0e-49 202.2 535 29.0
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 2.9e-49 200.7 642 28.8
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 8.5e-49 199.1 129 72.9
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 7.2e-48 196.1 184 55.4
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 7.2e-48 196.1 184 55.4
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 1.6e-47 194.9 263 47.9
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 5.1e-46 189.9 551 29.6
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.5e-42 178.3 117 66.7
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 1.3e-41 175.3 161 56.5
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 1.7e-41 174.9 140 63.6
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 7.2e-40 169.5 140 61.4
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 8.8e-38 162.5 114 68.4
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 4.4e-37 160.2 117 60.7
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 5.7e-37 159.8 96 77.1
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 4.8e-36 156.8 145 57.2
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 3.8e-33 147.1 96 69.8
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 6.8e-30 136.3 90 68.9
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.0e-29 134.8 139 49.6
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 7.7e-26 122.9 273 33.3
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 2.9e-25 120.9 87 66.7
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 2.1e-23 114.8 83 66.3
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 1.4e-14 85.5 274 27.0
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 5.7e-13 80.1 95 46.3
BolC9t57946H Brassica oleracea HOM05D005251 ORTHO05D006680 7.0e-11 73.2 51 62.7
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 3.5e-10 70.9 102 36.3
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 3.5e-10 70.9 102 36.3
COL.COLO4_18153 Corchorus olitorius HOM05D005251 ORTHO05D006680 5.9e-10 70.1 53 67.9
Actinidia25250 Actinidia chinensis HOM05D005251 ORTHO05D006680 7.8e-10 69.7 42 78.6
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 1.0e-09 69.3 103 36.9
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.7e-09 68.6 97 36.1
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 2.3e-09 68.2 116 35.3
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 3.9e-09 67.4 119 31.9
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 5.0e-09 67.0 97 36.1
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 5.0e-09 67.0 94 37.2
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 8.6e-09 66.2 92 37.0
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 8.6e-09 66.2 97 35.1
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.9e-08 65.1 97 35.1
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 2.5e-08 64.7 97 35.1
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 2.5e-08 64.7 97 35.1
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.5e-08 64.7 87 37.9
SalBow5G3528 Salvia bowleyana HOM05D000147 ORTHO05D005311 2.5e-08 64.7 47 61.7
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 3.3e-08 64.3 97 34.0
BolC6t35802H Brassica oleracea HOM05D005251 ORTHO05D006680 4.3e-08 63.9 55 60.0
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 9.5e-08 62.8 97 35.1
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 9.5e-08 62.8 97 35.1
C06p07130 Brassica napus HOM05D005251 ORTHO05D006680 1.6e-07 62.0 41 63.4
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 3.6e-07 60.8 87 36.8
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 6.1e-07 60.1 87 33.3
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 5.2e-06 57.0 85 31.8
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 8.9e-06 56.2 100 29.0


User provided reference genes

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