Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019903 Sechium edule HOM05D006217 ORTHO05D008480 5.9e-138 495.7 725 100.0
ClCG01G014190 Citrullus lanatus HOM05D006217 ORTHO05D008480 1.3e-121 441.4 724 96.0
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 1.2e-119 434.9 724 91.7
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 1.5e-117 427.9 724 85.8
Potri.015G069100 Populus trichocarpa HOM05D006217 ORTHO05D008480 3.5e-90 337.0 724 88.5
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 3.9e-89 333.6 726 84.0
CiPaw.11G034100 Carya illinoinensis HOM05D006217 ORTHO05D008480 8.6e-89 332.4 725 88.6
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 3.3e-88 330.5 731 78.8
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 5.6e-88 329.7 726 79.3
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 1.6e-87 328.2 724 78.9
Sabra15G0093400 Salix brachista HOM05D006217 ORTHO05D008480 2.8e-87 327.4 726 87.5
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 5.2e-86 323.2 738 82.2
Haze_07417 Corylus avellana HOM05D006217 ORTHO05D008480 6.8e-86 322.8 725 88.4
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 8.9e-86 322.4 731 78.5
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 1.2e-85 322.0 721 78.9
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.5e-85 321.6 691 81.5
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 1.5e-85 321.6 729 85.6
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 3.4e-85 320.5 728 79.7
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 2.2e-84 317.8 689 87.5
Dinv13121 Davidia involucrata HOM05D006217 ORTHO05D008480 2.9e-84 317.4 684 91.2
TAR622G0668 Trochodendron aralioides HOM05D006217 ORTHO05D008480 3.7e-84 317.0 684 90.5
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 4.9e-84 316.6 724 77.5
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 1.4e-83 315.1 725 88.3
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 2.4e-83 314.3 682 90.9
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 2.4e-83 314.3 724 87.4
AL2G34730 Arabidopsis lyrata HOM05D006217 ORTHO05D008480 3.2e-83 313.9 727 88.4
COL.COLO4_26823 Corchorus olitorius HOM05D006217 ORTHO05D008480 3.2e-83 313.9 707 88.5
AT1G74850 Arabidopsis thaliana HOM05D006217 ORTHO05D008480 5.4e-83 313.2 727 88.3
THA.LOC104809230 Tarenaya hassleriana HOM05D006217 ORTHO05D008480 1.6e-82 311.6 726 88.6
Thhalv10018112m.g Eutrema salsugineum HOM05D006217 ORTHO05D008480 2.1e-82 311.2 726 88.4
Carub.0002s2163 Capsella rubella HOM05D006217 ORTHO05D008480 2.7e-82 310.8 727 88.2
Aa31LG4G5060 Aethionema arabicum HOM05D006217 ORTHO05D008480 1.0e-81 308.9 706 90.1
C06p48860 Brassica napus HOM05D006217 ORTHO05D008480 1.0e-81 308.9 726 88.0
BolC6t39922H Brassica oleracea HOM05D006217 ORTHO05D008480 1.0e-81 308.9 726 88.0
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 1.0e-81 308.9 687 87.0
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 1.3e-81 308.5 692 81.2
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 3.9e-81 307.0 726 82.6
BcaC08g46950 Brassica carinata HOM05D006217 ORTHO05D008480 5.1e-81 306.6 704 90.2
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 8.6e-81 305.8 725 71.0
A07p40490 Brassica napus HOM05D006217 ORTHO05D008480 1.1e-80 305.4 727 87.9
BraA07t31592Z Brassica rapa HOM05D006217 ORTHO05D008480 1.5e-80 305.1 727 87.9
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 4.3e-80 303.5 716 78.1
Gohir.A12G276600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 4.3e-80 303.5 707 86.3
Sp5g29980 Schrenkiella parvula HOM05D006217 ORTHO05D008480 5.6e-80 303.1 726 87.5
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 9.5e-80 302.4 716 85.2
Gohir.D12G277600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 9.5e-80 302.4 707 86.1
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 2.1e-79 301.2 705 85.4
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 3.6e-79 300.4 668 86.8
PSO832G0921 Papaver somniferum HOM05D006217 ORTHO05D008480 6.2e-79 299.7 718 87.9
Duzib205G0682 Durio zibethinus HOM05D006217 ORTHO05D008480 1.1e-78 298.9 710 87.3
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 2.4e-78 297.7 712 77.8
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 6.8e-78 296.2 698 86.7
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 1.5e-77 295.0 716 78.1
EL10Ac5g10869 Beta vulgaris HOM05D006217 ORTHO05D008480 1.3e-76 292.0 701 87.7
PSO591G0410 Papaver somniferum HOM05D006217 ORTHO05D008480 1.3e-76 292.0 730 86.2
arahy.Tifrunner.gnm1.ann1.C8Z94U Arachis hypogaea HOM05D006217 ORTHO05D008480 1.7e-76 291.6 732 82.1
arahy.Tifrunner.gnm1.ann1.KCM1HB Arachis hypogaea HOM05D006217 ORTHO05D008480 3.8e-76 290.4 665 89.0
Medtr4g107210 Medicago truncatula HOM05D006217 ORTHO05D008480 6.4e-76 289.7 727 82.9
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 8.4e-76 289.3 722 81.3
Peaxi162Scf00017g02228 Petunia axillaris HOM05D006217 ORTHO05D008480 2.4e-75 287.7 666 88.0
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 9.2e-75 285.8 730 75.8
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 1.2e-74 285.4 709 82.8
AUR62021789 Chenopodium quinoa HOM05D006217 ORTHO05D008480 2.1e-74 284.6 725 83.7
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 2.1e-74 284.6 285 77.9
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 2.7e-74 284.3 693 83.7
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 2.7e-74 284.3 728 85.2
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 1.0e-73 282.3 709 82.8
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 1.3e-73 282.0 725 82.6
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 1.7e-73 281.6 666 86.5
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 8.7e-73 279.3 700 86.0
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 1.1e-72 278.9 724 81.1
Thecc.03G001400 Theobroma cacao HOM05D006217 ORTHO05D008480 1.5e-72 278.5 263 81.7
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 2.5e-72 277.7 284 78.2
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 5.6e-72 276.6 280 77.5
Migut.I00075 Erythranthe guttata HOM05D006217 ORTHO05D008480 7.3e-72 276.2 684 86.3
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.3e-71 275.4 285 76.8
MSTRG.23079 Avicennia marina HOM05D006217 ORTHO05D008480 2.1e-71 274.6 697 85.2
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 2.1e-71 274.6 707 77.2
CARHR068170 Cardamine hirsuta HOM05D006217 ORTHO05D008480 3.6e-71 273.9 282 76.6
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 2.4e-70 271.2 653 76.0
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 2.4e-70 271.2 760 60.9
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 5.3e-70 270.0 691 81.2
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 5.8e-69 266.5 781 60.2
SalBow5G1548 Salvia bowleyana HOM05D006217 ORTHO05D008480 5.8e-69 266.5 722 84.2
Hma1.2p1_0572F.1_g181080 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 1.7e-68 265.0 257 79.8
HanXRQChr16g0503451 Helianthus annuus HOM05D006217 ORTHO05D008480 1.1e-67 262.3 668 89.2
ECA232G4291 Erigeron canadensis HOM05D006217 ORTHO05D008480 7.8e-66 256.1 668 86.7
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 1.0e-65 255.8 681 80.2
Rhsim08G0164000 Rhododendron simsii HOM05D006217 ORTHO05D008480 3.0e-65 254.2 734 80.1
SGA_v2.0_scaffold56G20089 Striga asiatica HOM05D006217 ORTHO05D008480 3.0e-65 254.2 698 85.2
Lsat_1_v5_gn_4_74540 Lactuca sativa HOM05D006217 ORTHO05D008480 1.5e-64 251.9 662 90.5
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 1.5e-64 251.9 667 83.7
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 5.6e-64 250.0 725 72.1
VMungo1215G2521 Vigna mungo HOM05D006217 ORTHO05D008480 6.9e-62 243.0 279 71.7
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 7.6e-61 239.6 667 83.5
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 2.4e-59 234.6 667 83.2
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 3.1e-54 217.6 705 73.9
unitig_750.g28484 Utricularia gibba HOM05D006217 ORTHO05D008480 4.5e-53 213.8 141 73.8
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 1.0e-52 212.6 676 78.8
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 1.7e-52 211.8 666 81.5
AagrBONN_evm.TU.Sc2ySwM_362.2637 Anthoceros agrestis HOM05D006217 ORTHO05D008480 1.8e-46 191.8 206 79.6
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 1.2e-45 189.1 223 74.4
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 5.8e-45 186.8 99 85.9
CARHR068160 Cardamine hirsuta HOM05D006217 ORTHO05D008480 2.2e-44 184.9 99 83.8
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 2.5e-43 181.4 209 72.7
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 5.5e-43 180.3 99 81.8
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 3.3e-40 171.0 207 69.1
VMungo1215G1148 Vigna mungo HOM05D006217 ORTHO05D008480 5.7e-40 170.2 95 82.1
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 9.7e-40 169.5 658 57.9
Pp3c11_11830 Physcomitrium patens HOM05D006217 ORTHO05D008480 1.3e-39 169.1 224 69.2
ECA232G0106 Erigeron canadensis HOM05D006217 ORTHO05D008480 1.1e-35 156.0 98 75.5
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 7.9e-34 149.8 99 67.7
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 2.8e-31 141.4 99 68.7
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 2.8e-31 141.4 83 74.7
AUR62021792 Chenopodium quinoa HOM05D006217 ORTHO05D008480 6.1e-18 97.1 142 86.6
Dinv02652 Davidia involucrata HOM05D006217 ORTHO05D008480 1.7e-12 79.0 77 54.5
FvH4_5g08849 Fragaria vesca HOM05D006217 ORTHO05D008480 8.5e-12 76.6 56 58.9
CBR_g10873 Chara braunii HOM05D006217 ORTHO05D023528 4.2e-11 74.3 105 34.3
Lsat_1_v5_gn_3_59501 Lactuca sativa HOM05D001195 ORTHO05D001138 1.2e-10 72.8 48 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 2.2e-07 62.0 81 38.3
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 4.8e-07 60.8 97 32.0
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 4.8e-07 60.8 31 90.3
Aqoxy6G00504 Aquilegia oxysepala HOM05D006414 ORTHO05D007780 1.1e-06 59.7 162 23.5
HPP92_013691 Vanilla planifolia HOM05D001620 ORTHO05D005461 3.1e-06 58.2 97 28.9
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 4.1e-06 57.8 113 30.1
TWI74G0679 Tripterygium wilfordii HOM05D006414 ORTHO05D007780 9.1e-06 56.6 152 23.7


User provided reference genes

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