Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.8e-100 369.4 205 100.0
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 6.6e-87 324.3 205 87.3
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 6.9e-76 287.7 206 81.1
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.2e-50 203.0 209 62.2
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.1e-49 200.7 222 57.7
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.4e-49 200.3 209 62.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 5.5e-49 198.4 209 60.8
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 9.4e-49 197.6 203 60.1
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.2e-48 197.2 208 62.0
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.2e-48 197.2 153 79.1
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.2e-48 197.2 223 57.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-48 196.8 219 56.2
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.7e-48 196.1 188 65.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.6e-48 195.7 220 57.3
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 6.1e-48 194.9 205 60.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.0e-47 194.1 211 60.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.1e-47 191.8 210 58.6
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 5.1e-47 191.8 223 55.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 6.7e-47 191.4 210 58.6
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.8e-47 191.0 223 55.6
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.5e-46 190.3 210 59.0
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.5e-46 190.3 214 57.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.6e-46 189.5 165 66.1
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.3e-46 189.1 204 60.3
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.4e-46 188.7 208 59.6
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 4.4e-46 188.7 209 56.0
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.7e-45 186.8 168 61.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.8e-45 185.3 206 58.7
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 6.3e-45 184.9 212 57.5
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.1e-44 184.1 210 57.6
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 6.9e-44 181.4 206 56.3
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 6.9e-44 181.4 212 56.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 9.1e-44 181.0 213 57.3
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.5e-43 180.3 211 55.9
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.4e-43 179.1 213 56.8
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 3.4e-43 179.1 209 55.0
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.5e-43 178.7 206 58.3
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 7.7e-43 177.9 214 57.5
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.7e-42 176.8 207 59.4
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.9e-42 176.0 204 56.9
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 3.8e-42 175.6 216 59.3
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.8e-42 175.6 208 56.2
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 5.0e-42 175.3 210 56.2
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 6.5e-42 174.9 219 54.3
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 6.5e-42 174.9 201 57.2
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 8.5e-42 174.5 210 57.6
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.1e-41 174.1 209 53.1
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-41 173.7 170 65.3
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-41 173.7 216 58.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.4e-41 173.7 202 59.4
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.9e-41 173.3 150 70.7
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 2.5e-41 172.9 212 55.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 3.2e-41 172.6 171 56.7
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 9.4e-41 171.0 171 62.0
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.1e-40 169.9 172 64.5
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 6.1e-40 168.3 165 63.6
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.0e-39 167.5 165 61.8
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 3.9e-39 165.6 216 56.5
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 3.9e-39 165.6 207 56.0
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 5.2e-39 165.2 210 57.6
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 5.2e-39 165.2 203 58.1
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 6.7e-39 164.9 216 54.2
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 6.7e-39 164.9 165 60.0
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-38 163.3 168 61.9
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.7e-38 161.8 166 60.2
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 7.4e-38 161.4 215 54.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 9.7e-38 161.0 168 62.5
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.3e-37 160.6 207 52.7
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.7e-37 160.2 165 60.6
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.8e-37 159.5 183 59.0
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 4.8e-37 158.7 167 53.9
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.4e-36 157.1 165 60.0
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 1.8e-36 156.8 127 70.9
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.4e-36 156.4 180 52.2
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.1e-36 156.0 206 50.5
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 5.9e-35 151.8 210 53.8
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 2.5e-33 146.4 190 52.1
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 5.5e-33 145.2 279 42.3
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.2e-33 144.8 185 53.5
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.1e-32 143.3 165 52.7
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 2.7e-32 142.9 215 49.3
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 8.8e-31 137.9 203 52.2
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.5e-30 137.1 99 66.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 5.7e-30 135.2 201 47.8
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 7.5e-30 134.8 99 67.7
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 1.2e-27 127.5 287 40.1
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.5e-25 119.8 103 76.7
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.6e-24 117.1 91 83.5
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.6e-24 117.1 176 55.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 2.1e-24 116.7 95 58.9
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-24 116.3 164 56.7
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.3e-23 113.2 212 43.4
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 4.0e-23 112.5 92 59.8
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 5.7e-22 108.6 75 66.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.8e-21 106.3 201 40.8
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.3e-21 105.1 182 46.2
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-20 104.0 61 88.5
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.4e-20 103.2 173 46.8
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.4e-20 103.2 106 54.7
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 3.1e-20 102.8 182 46.2
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.6e-19 100.5 109 52.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 4.5e-19 99.0 102 52.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 4.5e-19 99.0 182 45.6
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.0e-18 97.8 136 52.2
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.3e-18 97.4 112 50.0
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.3e-18 97.4 112 50.0
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.3e-18 97.4 87 55.2
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.7e-18 97.1 93 54.8
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.3e-18 96.7 101 52.5
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.3e-18 96.7 107 49.5
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.9e-18 96.3 87 54.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 6.5e-18 95.1 110 49.1
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 6.5e-18 95.1 185 40.0
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.5e-17 94.0 96 50.0
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.9e-17 93.6 183 38.3
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.5e-17 93.2 96 51.0
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.5e-17 93.2 176 33.0
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 3.2e-17 92.8 116 45.7
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.2e-17 92.4 101 49.5
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 7.2e-17 91.7 177 39.5
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 7.2e-17 91.7 87 50.6
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.2e-16 90.9 177 40.7
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-16 90.9 88 54.5
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.2e-16 90.9 108 50.9
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.2e-16 90.9 87 52.9
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-16 90.1 88 53.4
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.1e-16 90.1 183 36.6
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 2.1e-16 90.1 74 71.6
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 3.6e-16 89.4 163 38.0
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 3.6e-16 89.4 163 38.0
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.6e-16 89.4 182 37.9
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 4.7e-16 89.0 88 53.4
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 6.1e-16 88.6 87 49.4
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.1e-16 88.6 175 37.7
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 6.1e-16 88.6 107 45.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 8.0e-16 88.2 87 52.9
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.0e-15 87.8 104 53.8
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.0e-15 87.8 110 52.7
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.0e-15 87.8 87 51.7
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.3e-15 86.7 84 53.6
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 2.3e-15 86.7 84 53.6
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.0e-15 86.3 162 43.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 3.0e-15 86.3 107 45.8
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 4.0e-15 85.9 114 50.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 4.0e-15 85.9 183 33.9
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 5.2e-15 85.5 139 54.0
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 6.8e-15 85.1 142 48.6
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 8.8e-15 84.7 87 49.4
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 8.8e-15 84.7 133 40.6
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.6e-14 83.2 87 48.3
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 5.7e-14 82.0 108 40.7
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 9.8e-14 81.3 140 35.7
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.4e-12 77.4 174 32.2
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 3.1e-12 76.3 74 54.1
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 4.5e-11 72.4 102 36.3
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 5.0e-10 68.9 96 55.2
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.9e-09 67.0 96 54.2
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 3.3e-09 66.2 104 37.5
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.6e-08 63.9 156 36.5
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 2.1e-08 63.5 50 62.0
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.0e-07 59.7 53 60.4
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 5.2e-07 58.9 181 37.6
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 8.9e-07 58.2 61 54.1
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.4e-06 55.8 151 39.1


User provided reference genes

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