Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.5e-295 1016.9 527 100.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.8e-273 943.3 529 90.5
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.0e-268 928.7 529 89.0
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.3e-256 888.6 535 86.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-234 816.6 472 83.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.9e-234 815.8 497 82.3
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.4e-234 815.5 476 83.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 4.2e-234 814.7 497 82.1
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.2e-234 814.7 461 86.3
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.1e-233 812.4 488 82.6
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 7.8e-233 810.4 480 81.2
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 3.9e-232 808.1 474 82.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 8.7e-232 807.0 464 84.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 8.7e-232 807.0 466 84.8
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 8.7e-232 807.0 475 82.3
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.5e-231 806.2 463 83.8
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.5e-231 806.2 472 82.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-231 806.2 474 81.9
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.9e-231 805.8 465 84.7
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.9e-231 805.8 474 81.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.3e-231 804.7 485 82.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.3e-231 803.9 474 82.3
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.1e-230 802.4 463 82.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 2.1e-230 802.4 478 81.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.8e-230 802.0 459 85.0
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.6e-230 801.6 460 84.1
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.4e-229 799.7 460 83.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.4e-229 798.9 486 80.9
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 4.0e-229 798.1 460 83.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 4.0e-229 798.1 460 84.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.3e-229 797.7 501 76.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 5.3e-229 797.7 464 83.6
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 6.9e-229 797.3 474 82.1
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 9.0e-229 797.0 460 83.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 9.0e-229 797.0 468 81.6
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.2e-228 796.6 477 80.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.6e-228 795.4 459 83.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.5e-228 794.7 467 82.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 9.9e-228 793.5 467 82.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.3e-227 793.1 463 83.6
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.3e-227 793.1 464 83.4
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.7e-227 792.7 457 84.0
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.8e-227 791.6 482 79.9
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.9e-227 791.2 497 77.5
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 6.4e-227 790.8 497 77.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-226 790.0 468 81.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.4e-226 789.6 468 82.1
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 3.2e-226 788.5 469 81.7
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.2e-226 788.1 468 81.4
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.2e-226 788.1 464 82.8
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.1e-225 785.8 461 81.1
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.7e-225 785.4 491 77.4
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.5e-225 785.0 481 80.0
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.3e-224 783.1 493 77.7
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.8e-224 782.7 476 80.5
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.8e-224 782.7 460 81.7
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 3.0e-224 781.9 470 80.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.0e-224 781.9 517 75.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.9e-224 781.6 476 79.8
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.1e-224 781.2 467 79.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 8.7e-224 780.4 459 81.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.9e-223 779.2 470 80.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.8e-222 775.4 509 75.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.4e-221 773.1 461 80.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.4e-221 772.3 467 79.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 5.3e-221 771.2 501 76.0
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.3e-221 771.2 492 77.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 9.0e-221 770.4 469 80.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 9.0e-221 770.4 461 80.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.2e-220 770.0 459 82.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.6e-220 768.8 482 79.0
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.5e-220 768.1 471 79.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 5.8e-220 767.7 460 79.8
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 9.9e-220 766.9 460 80.2
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.7e-219 766.1 471 79.0
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.7e-219 766.1 452 81.0
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.9e-219 764.6 469 78.0
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.4e-218 763.1 470 78.5
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 7.1e-218 760.8 463 79.0
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.5e-217 758.4 459 78.2
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.3e-216 756.5 504 73.2
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.8e-216 756.1 466 78.8
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.7e-216 754.2 482 76.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 6.7e-216 754.2 463 78.0
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.1e-215 753.4 463 77.8
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.9e-215 752.7 463 77.5
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-215 752.3 463 77.8
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.5e-215 752.3 463 77.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 9.6e-215 750.4 463 77.3
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.8e-214 748.8 511 72.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 3.7e-214 748.4 463 77.3
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 6.2e-214 747.7 463 77.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.2e-214 747.7 465 77.0
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.8e-213 746.1 463 77.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 9.0e-213 743.8 463 77.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 7.6e-212 740.7 510 72.5
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.7e-211 739.6 463 76.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.9e-211 738.8 460 77.6
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.9e-211 738.0 484 74.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 7.9e-209 730.7 483 74.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.5e-207 726.5 482 74.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.2e-204 716.8 497 73.0
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.2e-204 716.8 492 70.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.5e-204 716.5 483 72.3
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.2e-203 712.6 464 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.9e-200 701.8 485 69.9
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.7e-199 698.0 421 79.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.4e-197 693.3 489 69.3
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.4e-196 688.7 457 71.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.7e-196 687.6 472 73.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.5e-194 682.6 450 74.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-192 676.4 466 74.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.3e-192 676.0 459 72.1
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 9.7e-191 670.6 389 85.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.7e-190 669.8 431 75.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.4e-189 666.0 382 85.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.1e-189 665.6 382 85.1
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.0e-187 658.3 373 85.5
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.1e-183 647.1 373 82.8
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 5.9e-180 634.8 382 83.2
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.3e-179 633.6 453 66.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 8.5e-179 630.9 463 69.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 9.4e-178 627.5 453 68.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.2e-174 616.3 715 48.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 8.0e-169 597.8 429 69.5
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 8.0e-169 597.8 461 67.0
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 7.0e-165 584.7 453 65.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.9e-162 576.6 340 84.7
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.8e-153 546.2 395 72.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-114 417.2 321 67.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.5e-114 416.8 255 79.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 5.8e-111 405.6 238 81.9
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 8.4e-102 375.2 293 64.8
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.5e-95 354.4 453 40.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 6.7e-91 339.0 251 70.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 4.3e-90 336.3 467 38.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.7e-87 325.5 200 78.0
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 9.4e-85 318.5 456 38.8
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 8.5e-78 295.4 232 64.7
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.7e-66 256.1 400 42.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-61 241.5 135 86.7
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.5e-58 231.5 162 69.1
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.7e-57 228.0 170 67.1
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-53 215.3 165 68.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.3e-51 207.6 202 55.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.2e-42 178.7 373 30.8
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.5e-42 178.3 98 86.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 4.4e-42 176.8 131 61.1
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 9.8e-42 175.6 122 65.6
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 2.9e-41 174.1 253 42.7
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 5.9e-39 166.4 122 65.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.5e-37 161.8 90 85.6
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-32 145.2 125 56.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.7e-31 141.0 80 82.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 8.6e-30 136.0 93 74.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.1e-28 131.3 290 31.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.8e-28 131.0 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.5e-26 125.2 100 63.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.7e-25 121.7 74 79.7
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 3.0e-14 84.3 56 62.5
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.1e-11 74.3 40 85.0
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 4.0e-11 73.9 47 72.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.8e-11 73.2 43 76.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.2e-10 72.4 59 64.4
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.1e-07 61.6 38 76.3
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.7e-07 61.2 35 80.0
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 8.7e-06 56.2 34 76.5


User provided reference genes

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