Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.3e-307 1056.6 531 100.0
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 5.1e-272 940.6 533 88.2
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.9e-271 938.7 535 88.2
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 5.6e-271 937.2 535 87.7
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 3.6e-225 785.0 487 81.1
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 5.1e-224 781.2 504 78.4
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 7.4e-223 777.3 537 76.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 9.7e-223 776.9 479 81.4
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.7e-222 776.2 469 83.6
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 6.3e-222 774.2 496 79.6
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 2.4e-221 772.3 474 81.9
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 3.1e-221 771.9 462 83.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.5e-220 768.1 528 74.6
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 7.7e-220 767.3 488 79.9
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.7e-219 766.1 539 73.3
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.7e-219 766.1 527 75.0
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 8.5e-219 763.8 538 73.6
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.5e-218 762.3 444 84.9
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 2.7e-217 758.8 493 78.9
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 7.9e-217 757.3 533 73.2
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.0e-216 756.9 461 82.4
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.8e-216 756.1 531 72.9
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.3e-216 755.7 536 74.3
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 3.0e-216 755.4 503 76.9
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.0e-216 755.4 490 78.2
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 3.9e-216 755.0 506 76.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 3.9e-216 755.0 529 72.8
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 5.1e-216 754.6 496 75.8
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.3e-215 751.9 490 78.4
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.7e-215 751.1 528 72.2
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 7.4e-215 750.7 509 75.2
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 7.4e-215 750.7 465 80.2
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 9.7e-215 750.4 487 77.2
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 9.7e-215 750.4 509 76.0
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.2e-214 749.2 457 83.4
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.2e-214 749.2 457 83.2
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.8e-214 748.8 509 75.8
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 4.8e-214 748.0 473 79.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 4.8e-214 748.0 486 77.2
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.1e-213 746.9 431 84.7
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.8e-213 746.1 465 79.6
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.4e-213 745.7 466 79.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 5.3e-213 744.6 490 78.4
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 5.3e-213 744.6 470 79.4
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 7.0e-213 744.2 463 79.9
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 9.1e-213 743.8 534 73.0
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 9.1e-213 743.8 485 78.6
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.6e-212 743.0 465 79.4
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.5e-212 741.5 485 77.9
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 4.5e-212 741.5 446 82.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.9e-212 741.1 465 80.0
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 7.7e-212 740.7 468 79.3
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.7e-211 739.6 506 75.7
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.8e-211 738.4 426 86.4
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.9e-210 736.1 455 80.0
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 9.4e-210 733.8 461 79.2
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.1e-209 732.6 458 81.2
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.7e-209 732.3 444 82.4
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 2.7e-209 732.3 442 82.8
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 3.6e-209 731.9 447 80.3
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 3.6e-209 731.9 466 77.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.8e-208 729.6 447 80.5
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.3e-208 729.2 421 84.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.0e-208 728.8 467 78.6
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 4.0e-208 728.4 505 74.1
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.2e-208 728.0 425 84.5
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 6.7e-208 727.6 460 78.3
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 8.8e-208 727.2 426 84.3
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.5e-207 726.5 480 76.5
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.0e-207 726.1 425 84.5
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 4.4e-207 724.9 450 79.1
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 7.5e-207 724.2 463 78.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.3e-206 723.4 564 68.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.7e-206 723.0 465 77.8
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.7e-206 723.0 465 77.8
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.7e-206 723.0 472 76.7
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 2.8e-206 722.2 427 83.8
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.2e-206 720.7 446 79.1
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.4e-205 719.2 428 82.5
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.1e-205 718.8 520 71.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 3.1e-205 718.8 435 80.7
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 7.0e-205 717.6 437 80.5
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.2e-204 716.8 464 77.4
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-204 716.1 461 77.4
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.7e-204 715.7 428 82.7
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 3.5e-204 715.3 447 79.4
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 7.7e-204 714.1 468 76.9
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.7e-203 713.0 438 79.5
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.7e-203 713.0 437 80.3
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.2e-203 712.6 428 82.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.1e-202 710.3 450 78.0
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.1e-202 710.3 428 82.5
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.1e-202 710.3 428 82.5
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.9e-202 709.5 490 74.3
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 3.2e-202 708.8 506 71.3
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 4.2e-202 708.4 502 73.7
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 9.4e-202 707.2 458 76.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.2e-201 706.8 435 78.9
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.3e-200 702.6 466 75.8
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 5.2e-200 701.4 466 75.3
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.2e-196 690.3 476 72.9
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.7e-196 689.1 421 79.6
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.5e-196 688.7 478 70.9
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.7e-195 686.4 421 79.6
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 6.5e-195 684.5 435 75.9
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.5e-194 683.3 491 71.9
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.5e-194 682.6 485 72.2
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.0e-192 677.2 431 79.4
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.0e-192 675.6 467 74.5
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.5e-191 673.3 457 74.4
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.8e-189 666.4 429 77.6
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.6e-187 657.9 408 79.4
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.9e-186 656.4 474 69.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 6.1e-185 651.4 428 73.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.0e-180 636.3 440 70.9
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 7.3e-178 627.9 490 63.7
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.8e-177 625.9 430 70.9
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 4.6e-172 608.6 430 68.6
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 5.8e-167 591.7 362 80.7
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.1e-157 558.9 398 73.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.9e-155 552.4 327 82.9
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.5e-148 529.3 317 82.3
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-146 523.5 335 77.9
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 4.3e-146 522.3 428 61.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 9.9e-143 511.1 337 75.7
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.8e-142 509.2 328 77.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.0e-139 499.6 297 84.5
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 3.9e-139 499.2 451 56.3
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 8.7e-139 498.0 432 60.4
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.9e-128 461.8 297 78.5
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 6.7e-123 445.3 426 56.6
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-122 444.1 354 66.4
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 6.3e-121 438.7 272 77.9
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.1e-104 384.8 431 47.1
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.7e-99 365.5 242 77.3
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.8e-94 349.7 438 43.8
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.7e-79 298.9 175 81.7
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.2e-71 275.0 358 43.3
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.3e-53 213.8 177 65.5
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.4e-51 208.4 135 74.8
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-49 200.7 127 80.3
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.1e-46 189.9 182 53.8
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.6e-44 184.9 142 68.3
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 9.9e-42 175.6 119 68.9
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.0e-38 165.6 131 62.6
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 8.4e-33 146.0 90 82.2
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 6.0e-31 139.8 86 72.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 6.6e-30 136.3 102 64.7
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 6.6e-30 136.3 102 64.7
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 2.1e-28 131.3 80 76.2
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.8e-28 131.0 87 70.1
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 8.1e-28 129.4 87 70.1
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 3.1e-27 127.5 87 69.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-26 125.6 84 69.0
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 7.9e-23 112.8 136 47.8
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.3e-22 112.1 78 64.1
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.9e-21 108.2 112 52.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.9e-21 108.2 112 52.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.9e-21 108.2 256 32.4
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.3e-20 105.5 82 68.3
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 5.5e-16 90.1 53 79.2
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 6.7e-06 56.6 28 96.4


User provided reference genes

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