Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.0e-276 956.1 476 100.0
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 1.1e-230 803.1 468 85.3
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 6.4e-218 760.8 471 80.7
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 8.2e-197 690.6 532 69.2
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.4e-175 620.2 443 68.8
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.2e-173 612.8 450 68.9
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.0e-170 604.0 443 68.6
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 2.2e-170 602.8 450 67.6
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 3.2e-169 599.0 433 67.9
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 1.6e-168 596.7 429 69.5
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.6e-168 595.5 453 66.4
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 4.7e-168 595.1 459 65.1
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 8.0e-168 594.3 429 69.0
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 4.0e-167 592.0 429 69.0
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 9.8e-166 587.4 446 66.1
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.8e-164 583.2 464 65.5
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 9.1e-164 580.9 464 65.1
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 2.0e-163 579.7 427 66.5
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.7e-163 579.3 464 61.6
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 7.7e-163 577.8 431 66.1
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.5e-161 573.5 446 64.8
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.9e-161 573.2 430 67.0
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.5e-161 572.8 454 64.1
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.2e-161 571.2 454 64.3
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.2e-160 570.5 446 64.3
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.7e-160 568.5 430 66.0
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 4.7e-160 568.5 465 63.2
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.2e-158 563.9 447 64.4
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 2.6e-158 562.8 432 62.5
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 3.4e-158 562.4 429 62.5
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.7e-158 561.6 446 64.8
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 9.8e-158 560.8 447 64.7
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 2.4e-156 556.2 463 62.0
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.1e-156 555.4 429 61.5
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 5.4e-156 555.1 429 62.2
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 5.4e-156 555.1 462 61.5
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 1.2e-155 553.9 430 61.9
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 2.7e-155 552.7 429 62.0
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 2.7e-155 552.7 432 61.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 3.5e-155 552.4 424 63.7
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 7.7e-155 551.2 427 62.3
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.7e-154 550.1 437 63.2
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 3.8e-154 548.9 437 62.9
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 2.5e-153 546.2 437 62.7
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 3.3e-153 545.8 430 63.5
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.2e-152 543.9 428 61.7
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 2.8e-152 542.7 446 62.3
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 8.0e-152 541.2 461 59.0
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 2.3e-151 539.7 429 61.1
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 3.0e-151 539.3 431 63.3
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 4.0e-151 538.9 444 61.0
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.8e-151 538.1 431 62.9
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.3e-149 533.9 443 60.5
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.2e-149 533.1 444 60.1
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 2.9e-149 532.7 441 61.7
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 3.7e-149 532.3 445 59.8
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 8.3e-149 531.2 427 61.8
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.2e-147 527.3 464 59.3
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 1.6e-147 526.9 449 59.0
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.0e-147 526.6 404 65.1
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 3.5e-147 525.8 441 59.6
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 3.9e-146 522.3 436 61.9
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 4.3e-145 518.8 446 59.9
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 9.5e-145 517.7 431 60.6
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 2.8e-144 516.2 400 62.8
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 3.6e-144 515.8 453 58.7
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.0e-143 514.2 447 59.7
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 3.1e-143 512.7 447 60.0
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 2.0e-142 510.0 426 61.3
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 3.4e-142 509.2 466 56.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 3.4e-142 509.2 438 60.5
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 4.4e-142 508.8 447 60.2
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.5e-139 499.2 418 58.6
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.3e-138 497.3 464 57.5
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 3.9e-138 495.7 398 62.1
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 2.6e-134 483.0 444 57.7
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 5.4e-132 475.3 478 50.0
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 4.6e-131 472.2 430 56.7
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.3e-130 469.9 358 65.4
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 2.5e-129 466.5 427 55.5
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 3.6e-128 462.6 437 51.7
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.5e-126 457.2 459 55.8
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.5e-126 457.2 396 57.1
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.6e-121 438.0 464 53.4
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 4.4e-118 429.1 322 63.0
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 2.7e-115 419.9 324 64.2
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 3.0e-114 416.4 295 67.5
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 2.1e-112 410.2 719 37.0
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.8e-112 409.8 434 48.6
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 4.6e-107 392.5 392 55.9
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 4.6e-107 392.5 313 64.2
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 2.5e-105 386.7 365 52.3
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 1.3e-104 384.4 300 62.0
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 4.8e-104 382.5 365 49.6
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 3.5e-99 366.3 315 58.4
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 2.1e-96 357.1 443 45.1
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 3.7e-96 356.3 320 58.1
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.2e-94 351.3 391 47.1
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 5.8e-94 349.0 317 56.2
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 5.1e-90 335.9 311 56.9
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.5e-86 322.8 395 47.6
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.9e-82 309.7 246 65.4
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.0e-74 285.0 352 45.5
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.9e-74 283.1 242 61.2
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.9e-69 266.9 217 61.3
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.9e-69 266.9 400 41.0
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.9e-68 264.2 213 61.0
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 7.4e-65 252.3 174 65.5
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 4.4e-57 226.5 212 53.8
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 2.0e-54 217.6 209 55.5
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.8e-42 177.9 180 51.1
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 4.0e-42 176.8 136 68.4
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 1.2e-41 175.3 231 42.9
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 5.7e-41 172.9 135 61.5
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 1.0e-34 152.1 137 61.3
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 5.2e-34 149.8 134 59.7
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.7e-29 134.8 133 54.9
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.2e-27 128.6 104 61.5
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 7.8e-22 109.4 110 50.0
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.1e-19 101.3 76 65.8
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 6.2e-19 99.8 403 23.6
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 5.2e-18 96.7 377 24.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 5.8e-17 93.2 390 23.1
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 4.6e-14 83.6 125 41.6
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 6.8e-10 69.7 46 73.9
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 1.1e-07 62.4 405 23.7
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 6.0e-06 56.6 40 70.0


User provided reference genes

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