Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.7e-276 955.3 462 100.0
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 4.9e-223 777.7 452 82.5
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 6.7e-212 740.7 452 79.4
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 3.3e-187 658.7 463 72.8
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.0e-164 583.9 453 60.5
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.9e-164 580.9 456 59.9
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 4.3e-158 562.0 542 52.2
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.2e-157 560.5 460 58.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.1e-150 537.3 460 55.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 7.3e-150 534.6 459 55.6
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.8e-149 532.7 460 53.5
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 5.2e-148 528.5 459 54.9
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 9.8e-147 524.2 456 55.0
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.4e-145 520.4 463 52.3
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.2e-145 519.2 457 53.2
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 5.1e-143 511.9 424 55.7
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 6.6e-143 511.5 461 54.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.8e-141 506.1 462 50.6
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 5.2e-140 501.9 457 50.8
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 8.4e-138 494.6 461 52.1
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 4.1e-137 492.3 458 52.0
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 9.2e-137 491.1 458 51.3
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 7.8e-136 488.0 459 51.2
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 8.6e-135 484.6 458 49.3
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.1e-134 484.2 457 51.0
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.8e-132 476.9 459 50.3
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 6.9e-132 474.9 407 54.5
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.2e-131 474.2 461 47.9
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 7.6e-131 471.5 461 48.2
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.7e-130 470.3 464 48.7
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 8.4e-130 468.0 438 50.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.9e-129 466.8 470 50.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.5e-128 462.6 459 46.6
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 4.6e-128 462.2 456 47.6
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.0e-127 461.1 456 47.6
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.8e-125 453.0 460 47.8
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.8e-125 453.0 460 47.8
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 8.1e-125 451.4 459 48.4
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.4e-124 450.7 450 48.7
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.2e-123 447.6 464 46.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 7.6e-123 444.9 458 47.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 3.8e-122 442.6 507 44.2
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 4.9e-122 442.2 462 46.5
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.4e-121 439.9 461 45.1
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.4e-116 424.1 450 48.7
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.5e-115 420.6 467 45.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.9e-113 413.7 456 45.8
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-112 410.6 458 46.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.1e-112 410.2 458 46.7
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.1e-112 410.2 456 45.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.5e-112 409.5 458 46.7
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.5e-112 409.5 484 43.8
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.0e-112 408.7 469 46.7
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 3.0e-111 406.4 459 45.1
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 9.6e-110 401.4 478 46.0
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.8e-109 399.1 459 45.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.2e-109 398.7 459 45.1
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.2e-109 398.7 462 44.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 1.2e-107 394.4 399 48.6
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.5e-107 394.0 459 45.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 2.9e-106 389.8 456 43.6
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.2e-104 384.4 472 42.8
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.6e-104 384.0 464 43.1
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.0e-104 382.1 460 43.3
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-103 380.2 494 41.9
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.0e-103 379.8 458 44.8
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 8.7e-103 378.3 526 41.4
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.5e-102 377.5 451 44.8
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.9e-102 377.1 460 43.7
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.5e-102 376.7 381 50.7
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.3e-102 376.3 458 44.5
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 3.3e-102 376.3 462 42.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.6e-101 374.0 468 41.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.4e-100 370.2 490 41.2
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.1e-100 369.4 459 41.6
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 5.3e-100 369.0 421 45.8
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 6.5e-98 362.1 482 39.6
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.1e-96 357.1 456 40.6
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.7e-96 356.7 456 40.6
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 4.6e-96 355.9 456 40.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 7.9e-96 355.1 451 40.8
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 8.7e-95 351.7 378 46.8
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.7e-94 349.0 419 43.0
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.1e-92 342.8 450 41.1
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.1e-92 342.8 450 41.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.6e-91 340.1 357 46.8
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.4e-91 339.7 455 40.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 7.7e-91 338.6 449 40.1
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 2.2e-90 337.0 453 39.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.8e-90 336.3 457 40.5
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.1e-89 334.7 451 39.9
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.1e-89 334.7 459 40.3
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.4e-89 334.3 457 41.6
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-88 331.3 459 40.3
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.6e-88 330.9 457 40.5
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.7e-88 330.1 390 43.1
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 3.6e-88 329.7 468 38.7
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 6.1e-88 328.9 453 39.1
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.0e-87 328.2 471 38.0
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.4e-87 327.8 451 39.2
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.0e-87 326.6 466 39.9
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.0e-87 326.6 466 39.9
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 3.9e-87 326.2 451 39.2
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.9e-87 326.2 451 40.4
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.1e-86 324.7 451 38.6
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.5e-86 324.3 477 37.1
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.0e-86 323.9 475 38.5
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.3e-86 323.2 472 37.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.2e-83 314.7 458 38.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.6e-83 313.5 384 42.2
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.3e-79 300.4 452 36.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 8.8e-79 298.5 460 36.5
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 8.8e-79 298.5 460 36.5
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 2.0e-78 297.4 461 38.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 2.8e-77 293.5 462 36.6
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 8.2e-77 292.0 456 36.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 8.2e-77 292.0 486 35.4
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.8e-76 290.8 308 48.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 7.0e-76 288.9 457 37.2
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.0e-75 287.3 451 37.3
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.5e-75 286.2 462 37.2
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 2.9e-74 283.5 464 36.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.1e-73 281.6 265 51.7
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 8.0e-72 275.4 463 34.3
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 1.8e-71 274.2 489 34.8
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.0e-70 270.8 256 52.0
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 4.4e-70 269.6 258 51.9
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 2.8e-69 266.9 425 36.9
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.4e-68 264.6 432 36.8
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.8e-68 264.2 481 34.1
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.7e-67 258.8 317 42.0
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.1e-65 255.0 381 38.3
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 7.2e-65 252.3 489 32.9
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 5.7e-62 242.7 335 40.3
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.7e-59 233.8 461 35.4
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.5e-59 233.0 506 31.0
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 2.3e-58 230.7 305 41.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 2.3e-58 230.7 311 38.6
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.5e-57 226.1 309 41.1
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 9.5e-57 225.3 299 39.5
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.7e-50 204.5 452 30.3
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.2e-48 198.4 352 33.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.2e-46 191.8 250 38.4
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.4e-46 189.9 291 39.5
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.5e-41 174.9 144 54.9
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.2e-38 165.2 198 44.4
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.5e-38 164.9 297 35.4
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.6e-38 164.1 190 45.8
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.2e-37 161.0 134 56.0
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.1e-33 148.7 126 55.6
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.3e-29 135.2 293 29.4
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.2e-27 128.6 436 24.8
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.3e-26 125.2 190 34.7
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 3.3e-25 120.6 83 63.9
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 8.4e-21 105.9 121 45.5
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 3.0e-18 97.4 71 66.2
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 4.3e-17 93.6 138 38.4
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.0e-14 84.7 131 42.7
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 5.4e-12 76.6 61 55.7
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 7.1e-12 76.3 159 30.8
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.0e-11 73.2 80 36.2
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 7.8e-11 72.8 414 23.7
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.0e-10 72.4 83 41.0
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 1.9e-09 68.2 66 43.9
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.6e-08 65.1 97 41.2
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.8e-08 64.3 60 53.3
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 6.9e-07 59.7 36 72.2


User provided reference genes

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