Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.3e-91 339.7 170 100.0
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.7e-73 278.9 166 81.9
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.6e-68 262.3 166 77.7
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 3.1e-66 255.4 162 78.4
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.2e-65 253.4 162 77.2
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 4.5e-65 251.5 162 75.3
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 4.5e-65 251.5 161 77.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 5.9e-65 251.1 167 73.7
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.0e-64 250.4 154 81.8
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.7e-64 249.6 163 75.5
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.2e-64 249.2 167 75.4
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 2.2e-64 249.2 162 77.2
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.9e-64 248.8 158 77.2
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.1e-63 246.9 168 72.6
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.9e-63 246.1 162 76.5
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 2.5e-63 245.7 163 74.8
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.5e-63 245.7 162 72.8
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 7.2e-63 244.2 167 72.5
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.6e-62 241.9 167 71.9
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.0e-61 240.4 171 69.6
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.0e-61 240.4 165 70.9
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.3e-61 239.2 167 71.3
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.3e-61 239.2 167 71.3
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 4.0e-61 238.4 163 72.4
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 4.0e-61 238.4 163 72.4
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 5.2e-61 238.0 162 72.2
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 8.8e-61 237.3 163 69.9
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 8.8e-61 237.3 163 69.9
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.5e-60 236.5 167 70.1
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 1.5e-60 236.5 183 68.3
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.0e-60 236.1 171 68.4
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.7e-60 234.6 163 71.2
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.7e-59 233.0 167 69.5
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.7e-59 233.0 163 71.2
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.7e-59 233.0 169 65.7
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.2e-59 232.6 169 66.9
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.8e-59 232.3 169 69.8
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 8.3e-59 230.7 163 69.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 3.1e-58 228.8 163 69.3
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 9.2e-58 227.3 202 58.4
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.2e-57 226.9 154 73.4
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.2e-57 226.9 154 73.4
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 2.7e-57 225.7 166 68.1
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 2.7e-57 225.7 163 68.1
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.5e-57 225.3 164 67.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 5.9e-57 224.6 150 74.7
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.3e-56 223.4 163 67.5
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-55 220.3 167 65.9
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.1e-55 220.3 163 65.6
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 2.8e-54 215.7 167 64.1
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 3.6e-54 215.3 154 69.5
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.6e-54 215.3 163 65.6
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 4.7e-54 214.9 168 64.3
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 6.1e-54 214.5 169 63.9
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.4e-53 213.4 163 65.0
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.4e-53 213.4 154 67.5
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 2.3e-53 212.6 164 64.6
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 5.2e-53 211.5 164 64.0
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 8.9e-53 210.7 163 64.4
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 8.9e-53 210.7 179 59.8
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 2.0e-52 209.5 167 62.9
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 9.8e-52 207.2 164 65.2
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 4.9e-51 204.9 162 66.0
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 5.4e-50 201.4 162 62.3
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 5.4e-50 201.4 167 59.9
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 9.2e-50 200.7 168 61.3
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 4.6e-49 198.4 163 59.5
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 5.9e-49 198.0 162 59.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.0e-48 197.2 164 62.2
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.3e-48 196.8 169 59.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.3e-48 196.8 169 59.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.3e-48 196.8 169 59.2
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.3e-48 196.8 169 59.8
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.7e-48 196.4 167 60.5
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 3.9e-48 195.3 169 59.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 3.9e-48 195.3 169 59.2
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 5.0e-48 194.9 124 77.4
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 8.6e-48 194.1 172 59.9
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 3.3e-47 192.2 167 59.3
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 3.3e-47 192.2 167 58.1
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 5.6e-47 191.4 125 75.2
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 5.6e-47 191.4 165 58.2
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 9.5e-47 190.7 169 58.6
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 2.1e-46 189.5 167 56.9
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.6e-46 188.7 163 58.9
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.6e-46 188.7 163 58.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 4.7e-46 188.3 162 58.0
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.0e-45 187.2 170 57.6
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 2.3e-45 186.0 165 58.8
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 2.3e-45 186.0 165 58.8
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 2.3e-45 186.0 165 58.8
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 2.3e-45 186.0 162 58.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.2e-45 184.9 152 63.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 4.9e-43 178.3 168 56.0
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 7.0e-42 174.5 165 53.9
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 7.3e-39 164.5 164 53.7
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 3.1e-37 159.1 183 48.1
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 4.0e-37 158.7 120 63.3
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.5e-36 156.8 183 48.1
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.5e-36 154.5 160 48.1
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 9.8e-36 154.1 164 51.8
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-35 152.5 165 49.7
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-34 150.6 181 44.8
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-31 139.8 177 46.9
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-31 139.0 180 47.8
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-31 138.3 181 42.0
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-27 126.7 176 42.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-27 125.2 185 43.2
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 8.4e-27 124.4 186 38.2
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-26 123.2 168 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 4.6e-25 118.6 138 43.5
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-23 114.0 181 43.1
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.5e-23 113.6 106 51.9
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.5e-23 113.6 112 54.5
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-23 111.7 166 41.0
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 7.3e-23 111.3 114 48.2
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 6.2e-22 108.2 163 38.0
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-21 105.1 172 40.1
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 8.9e-21 104.4 70 72.9
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 8.9e-21 104.4 68 69.1
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-20 102.1 165 34.5
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 2.9e-19 99.4 118 49.2
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-19 98.6 139 39.6
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-18 96.3 169 35.5
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-18 96.3 174 34.5
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 4.2e-18 95.5 139 38.1
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 9.3e-18 94.4 75 65.3
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.7e-17 92.8 132 40.9
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-17 92.4 180 35.0
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-17 92.4 168 32.7
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 7.8e-17 91.3 71 69.0
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.0e-16 90.9 164 31.1
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-16 90.5 168 32.7
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-15 85.9 114 46.5
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-14 83.6 173 31.8
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-13 80.9 153 30.7
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.8e-13 80.1 109 43.1
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-13 79.3 177 32.2
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 5.3e-13 78.6 184 29.9
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 5.3e-13 78.6 113 40.7
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 5.3e-13 78.6 148 35.8
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 9.0e-13 77.8 133 33.1
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 9.0e-13 77.8 141 36.9
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-12 75.1 173 32.4
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-11 72.0 175 28.6
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 6.4e-11 71.6 158 28.5
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 3.2e-10 69.3 131 29.8
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-09 66.6 126 33.3
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-09 66.6 132 31.8
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-08 62.8 172 28.5
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 6.7e-08 61.6 43 67.4
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 9.6e-07 57.8 128 32.0
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-06 57.4 64 50.0
Dinv01344 Davidia involucrata HOM05D065005 ORTHO05D005623 2.1e-06 56.6 31 80.6


User provided reference genes

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