Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.6e-62 242.7 126 100.0
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 2.1e-51 205.7 127 85.8
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 4.0e-50 201.4 127 84.3
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 6.2e-43 177.6 127 76.4
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 5.4e-39 164.5 118 71.2
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 6.0e-38 161.0 122 69.7
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 1.5e-36 156.4 126 68.3
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.5e-36 155.6 121 71.9
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 9.5e-36 153.7 123 67.5
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 1.2e-35 153.3 119 69.7
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.6e-35 152.9 123 65.9
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.1e-34 150.2 123 65.9
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 1.8e-34 149.4 118 66.9
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 3.1e-34 148.7 121 66.1
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 4.0e-34 148.3 117 68.4
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 6.8e-34 147.5 124 64.5
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 8.9e-34 147.1 116 68.1
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 1.2e-33 146.7 122 65.6
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 2.6e-33 145.6 118 66.1
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 4.4e-33 144.8 129 64.3
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 4.4e-33 144.8 130 62.3
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 9.9e-33 143.7 123 61.8
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 1.3e-32 143.3 127 62.2
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 1.3e-32 143.3 120 66.7
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.7e-32 142.9 123 63.4
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.9e-32 142.1 118 64.4
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 2.9e-32 142.1 127 61.4
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 2.9e-32 142.1 125 62.4
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 3.7e-32 141.7 121 62.8
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 4.9e-32 141.4 118 63.6
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 8.4e-32 140.6 120 66.7
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 1.4e-31 139.8 124 62.9
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 1.4e-31 139.8 120 65.0
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.4e-31 139.0 118 63.6
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 7.1e-31 137.5 122 61.5
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 9.2e-31 137.1 113 64.6
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 9.2e-31 137.1 122 63.1
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 2.1e-30 136.0 124 65.3
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 7.8e-30 134.0 121 62.0
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 1.0e-29 133.7 131 56.5
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.7e-29 132.9 122 59.8
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 3.9e-29 131.7 112 61.6
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 8.6e-29 130.6 127 59.1
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.1e-28 130.2 115 60.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 5.6e-28 127.9 114 61.4
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 7.3e-28 127.5 112 66.1
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 7.3e-28 127.5 126 59.5
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 9.6e-28 127.1 127 55.1
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 1.6e-27 126.3 119 60.5
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 2.1e-27 125.9 114 59.6
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.8e-27 125.6 115 59.1
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 3.6e-27 125.2 127 57.5
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 3.6e-27 125.2 113 60.2
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 8.1e-27 124.0 131 57.3
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.1e-26 123.6 120 58.3
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.8e-26 122.9 117 59.8
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.8e-26 122.9 115 56.5
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 2.4e-26 122.5 120 56.7
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.4e-26 122.5 127 55.1
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.4e-26 122.5 117 59.8
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 6.8e-26 120.9 122 57.4
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 6.8e-26 120.9 105 62.9
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.2e-25 120.2 124 55.6
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.2e-25 120.2 127 54.3
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 3.4e-25 118.6 123 56.1
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 5.8e-25 117.9 105 62.9
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 1.3e-24 116.7 120 55.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.7e-24 116.3 117 55.6
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.2e-24 115.9 122 54.1
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 2.2e-24 115.9 122 50.8
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 2.9e-24 115.5 117 55.6
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.8e-24 115.2 114 55.3
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.9e-24 114.8 119 55.5
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 8.4e-24 114.0 117 54.7
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.1e-23 113.6 120 55.0
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.4e-23 113.2 115 53.9
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 6.0e-22 107.8 171 40.9
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 7.8e-22 107.5 124 53.2
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 7.8e-22 107.5 118 53.4
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 1.3e-21 106.7 115 54.8
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 3.9e-21 105.1 120 53.3
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 3.9e-21 105.1 113 54.9
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 3.9e-21 105.1 120 53.3
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 8.7e-21 104.0 105 54.3
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.9e-20 102.8 120 50.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.9e-20 102.8 115 50.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 2.5e-20 102.4 128 50.0
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 2.5e-20 102.4 120 53.3
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 3.3e-20 102.1 123 52.0
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 3.3e-20 102.1 123 52.0
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 3.3e-20 102.1 123 52.0
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 4.3e-20 101.7 64 78.1
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.6e-19 99.8 115 48.7
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 2.1e-19 99.4 64 76.6
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.8e-19 99.0 123 50.4
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 3.6e-19 98.6 74 67.6
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 8.1e-19 97.4 108 52.8
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 8.1e-19 97.4 110 51.8
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 2.6e-17 92.4 124 44.4
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 3.4e-17 92.0 81 61.7
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 4.4e-17 91.7 118 47.5
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 2.2e-16 89.4 120 47.5
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 8.4e-16 87.4 111 45.9
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.9e-15 86.3 65 70.8
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 2.4e-15 85.9 105 46.7
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 2.1e-14 82.8 103 45.6
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 4.6e-14 81.6 109 47.7
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 6.0e-14 81.3 84 56.0
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.3e-13 80.1 129 42.6
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 3.0e-13 79.0 114 44.7
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 3.0e-13 79.0 114 44.7
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 1.3e-08 63.5 44 72.7
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.3e-08 63.5 155 32.9
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 1.1e-07 60.5 54 50.0
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.4e-07 59.3 63 44.4
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.4e-07 59.3 63 44.4
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 3.2e-07 58.9 109 38.5
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 4.2e-07 58.5 63 46.0
CANSAT25G0269 Cannabis sativa HOM05D005384 ORTHO05D006477 5.5e-07 58.2 63 44.4
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 7.1e-07 57.8 63 42.9
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 9.3e-07 57.4 63 42.9
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.2e-06 57.0 27 88.9
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.2e-06 57.0 89 41.6
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.2e-06 57.0 63 42.9
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 1.6e-06 56.6 63 42.9
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.6e-06 56.6 86 48.8
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 1.6e-06 56.6 63 44.4
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.6e-06 56.6 112 35.7
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 1.6e-06 56.6 53 47.2
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 2.1e-06 56.2 134 32.1
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-06 56.2 94 37.2
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.1e-06 56.2 63 44.4
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 2.1e-06 56.2 63 41.3
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 2.7e-06 55.8 63 42.9
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 2.7e-06 55.8 63 42.9
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.7e-06 55.8 76 40.8
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 2.7e-06 55.8 63 44.4
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 2.7e-06 55.8 63 41.3
MCO15G305 Micromonas commoda HOM05D006753 ORTHO05D008521 2.7e-06 55.8 49 49.0
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 2.7e-06 55.8 53 47.2
COL.COLO4_24446 Corchorus olitorius HOM05D005384 ORTHO05D006477 3.5e-06 55.5 63 44.4
Duzib133G1182 Durio zibethinus HOM05D005384 ORTHO05D006477 3.5e-06 55.5 63 42.9
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.5e-06 55.5 63 42.9
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 3.5e-06 55.5 63 46.0
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 3.5e-06 55.5 63 42.9
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 4.6e-06 55.1 72 38.9
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 4.6e-06 55.1 63 44.4
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 4.6e-06 55.1 63 42.9
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 4.6e-06 55.1 63 42.9
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 4.6e-06 55.1 63 41.3
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 4.6e-06 55.1 63 41.3
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 4.6e-06 55.1 51 47.1
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 6.0e-06 54.7 47 53.2
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 6.0e-06 54.7 60 48.3
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 6.0e-06 54.7 63 44.4
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 6.0e-06 54.7 63 41.3
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 6.0e-06 54.7 60 48.3
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 7.9e-06 54.3 63 44.4
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 7.9e-06 54.3 63 42.9
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 7.9e-06 54.3 63 42.9
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 7.9e-06 54.3 66 42.4
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 7.9e-06 54.3 63 42.9


User provided reference genes

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