Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.7e-150 536.6 406 100.0
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 5.6e-130 468.4 406 90.9
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.8e-129 466.1 408 90.4
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 4.8e-129 465.3 406 88.4
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.3e-110 404.1 409 83.1
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 3.8e-110 402.5 408 81.9
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 2.5e-109 399.8 408 75.7
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 2.8e-105 386.3 222 85.6
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 4.8e-105 385.6 222 83.8
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.1e-104 384.4 223 85.7
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 1.1e-104 384.4 223 87.0
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.1e-104 384.4 408 77.0
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.8e-104 383.6 409 74.3
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.8e-104 383.6 222 83.8
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.8e-104 383.6 408 74.8
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 5.3e-104 382.1 224 83.5
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 5.3e-104 382.1 224 83.5
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 5.3e-104 382.1 224 83.5
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.3e-104 382.1 223 83.9
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 9.1e-104 381.3 222 83.3
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.2e-103 380.9 405 74.3
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.2e-103 380.9 223 83.4
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.5e-103 380.6 222 82.9
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.5e-103 380.6 406 75.6
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.6e-103 379.8 222 83.3
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 5.9e-103 378.6 222 82.9
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.0e-102 377.9 407 77.4
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.0e-102 377.9 407 77.4
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.0e-102 377.9 409 73.6
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 1.0e-102 377.9 222 83.3
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.8e-102 375.9 221 81.4
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 3.8e-102 375.9 219 84.0
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.0e-102 375.6 409 73.8
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.0e-102 375.6 409 73.6
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 5.0e-102 375.6 223 84.3
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 5.0e-102 375.6 223 82.5
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 5.0e-102 375.6 223 82.5
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 8.5e-102 374.8 222 83.3
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 8.5e-102 374.8 223 82.5
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.1e-101 374.4 222 82.4
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.1e-101 374.4 223 83.0
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.9e-101 373.6 222 82.0
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.9e-101 373.6 409 73.3
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 2.5e-101 373.2 225 81.3
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.5e-101 373.2 222 81.5
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 9.4e-101 371.3 221 82.4
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 9.4e-101 371.3 408 75.2
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.6e-100 370.5 408 72.8
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 2.1e-100 370.2 223 80.7
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 4.7e-100 369.0 223 81.2
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 2.3e-99 366.7 219 80.4
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.1e-99 365.5 223 80.7
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 6.7e-99 365.2 222 81.5
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 8.8e-99 364.8 223 78.9
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 8.8e-99 364.8 223 78.9
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 2.0e-98 363.6 225 80.4
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.0e-98 363.6 240 75.8
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.6e-98 363.2 420 70.5
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 4.4e-98 362.5 223 80.3
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 4.4e-98 362.5 405 72.3
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 5.7e-98 362.1 223 79.8
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 5.7e-98 362.1 188 92.6
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 7.4e-98 361.7 215 82.8
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 9.7e-98 361.3 222 78.4
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.3e-97 360.9 222 80.2
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.7e-97 360.5 222 78.4
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 4.8e-97 359.0 274 69.3
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 8.2e-97 358.2 223 79.8
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.8e-96 357.1 216 80.6
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.8e-96 357.1 216 80.6
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 3.1e-96 356.3 223 78.9
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 5.3e-96 355.5 271 68.6
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 5.3e-96 355.5 223 79.8
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 9.1e-96 354.8 221 79.2
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 9.1e-96 354.8 221 79.2
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 9.1e-96 354.8 221 79.2
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-95 354.0 219 79.5
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.5e-95 354.0 222 79.3
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 2.0e-95 353.6 190 88.9
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.6e-95 353.2 190 87.4
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 4.5e-95 352.4 190 87.4
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 7.7e-95 351.7 190 87.4
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.0e-94 351.3 219 78.5
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.7e-94 350.5 190 86.8
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.9e-94 349.7 190 86.8
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 5.0e-94 349.0 190 87.9
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 6.5e-94 348.6 190 86.8
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.1e-93 347.8 190 86.3
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.1e-93 347.8 190 85.8
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.5e-93 345.5 214 79.4
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 7.2e-93 345.1 190 86.3
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 7.2e-93 345.1 190 85.8
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 9.4e-93 344.7 423 59.8
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.6e-92 342.8 223 76.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 6.1e-92 342.0 190 85.8
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.4e-91 340.9 190 85.3
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 3.9e-91 339.3 191 84.3
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.1e-90 337.8 190 84.2
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 9.7e-90 334.7 213 76.5
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.3e-89 334.3 223 74.0
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.7e-89 334.0 197 82.2
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 3.7e-89 332.8 190 81.1
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.4e-88 330.9 212 74.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 5.9e-87 325.5 218 73.9
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 5.9e-87 325.5 211 75.8
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 5.9e-87 325.5 190 81.1
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 7.7e-87 325.1 190 81.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.2e-86 323.6 231 74.5
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 2.5e-85 320.1 186 82.8
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 5.5e-85 318.9 200 80.0
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 7.2e-85 318.5 406 71.9
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.4e-83 314.3 167 88.0
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.3e-83 313.5 190 77.9
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 4.0e-83 312.8 167 86.2
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.2e-81 307.0 222 72.1
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.0e-75 286.6 227 62.6
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 2.5e-69 266.9 190 63.2
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.3e-65 254.6 221 61.5
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.6e-55 221.1 185 54.6
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 7.3e-53 212.2 184 54.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 3.6e-52 209.9 171 63.7
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 1.8e-51 207.6 236 48.7
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.3e-46 191.4 97 90.7
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 3.9e-46 189.9 313 64.5
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 4.0e-43 179.9 127 71.7
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 6.8e-43 179.1 94 88.3
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.2e-24 117.1 143 51.7
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.2e-24 116.7 70 80.0
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.2e-24 116.7 70 80.0
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.1e-23 114.4 85 70.6
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 2.3e-14 84.3 50 78.0
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 4.3e-13 80.1 69 60.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.3e-12 78.6 53 60.4
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 6.9e-11 72.8 42 81.0
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 2.3e-06 57.8 133 34.6
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 2.3e-06 57.8 54 57.4


User provided reference genes

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