Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 4692.5 2406 100.0
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 3883.2 2427 82.3
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 3748.7 2416 80.0
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 3741.8 2415 80.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2831.6 2436 60.7
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2798.5 2461 59.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2786.1 2403 60.4
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2742.2 2442 58.0
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2736.4 2430 58.1
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2716.0 2434 58.2
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2706.4 2435 58.8
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2689.1 2425 57.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2679.8 2428 57.2
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2677.9 2429 56.8
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2669.0 2463 56.2
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2667.9 2437 56.6
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2659.4 2463 56.1
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2656.3 2463 55.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2651.3 2432 57.2
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2647.8 2434 57.0
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2646.7 2463 55.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2646.3 2434 57.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2641.3 2441 56.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2636.3 2433 57.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2635.9 2433 57.0
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2617.0 2430 56.5
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2610.5 2425 56.9
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2609.3 2445 56.4
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2599.7 2432 55.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2594.7 2427 55.4
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2590.5 2433 56.7
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2516.5 2475 53.3
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2515.7 2405 54.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2510.3 2420 54.3
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2503.4 2424 54.3
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2499.5 2408 54.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2493.8 2394 54.1
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2492.6 2466 53.6
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2489.1 2416 53.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2485.7 2461 53.5
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2481.4 2433 53.3
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2468.0 2424 53.3
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2464.1 2427 53.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2462.2 2404 53.4
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2449.5 2438 52.6
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2411.3 2368 53.5
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2410.9 2441 52.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2392.1 2393 52.8
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2360.1 2107 58.2
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2333.5 2430 51.0
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2322.4 2426 50.7
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2322.4 2488 50.8
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2317.3 2426 50.9
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2315.8 2415 50.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2306.2 2424 50.3
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2303.9 2439 50.3
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2300.0 2426 51.2
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2298.1 2429 50.9
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2295.0 2429 51.6
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2286.9 2386 50.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2285.8 2433 50.4
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2285.4 2432 49.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2283.4 2433 51.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2282.7 2418 50.6
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2279.6 2427 51.1
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2275.7 2456 50.6
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2266.1 2460 49.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2264.2 2438 49.7
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2261.5 2438 49.2
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2261.1 2428 49.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2252.2 2431 52.0
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2243.8 2429 49.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2238.8 2441 48.8
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2232.2 2460 49.4
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2227.2 2411 49.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2223.7 2449 50.1
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2211.4 2430 48.1
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2209.9 2425 49.4
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2189.8 2450 48.8
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2167.5 2430 50.1
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2151.3 2436 47.5
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2144.0 2438 47.3
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2138.2 2422 47.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2127.8 2428 47.0
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2124.0 2437 47.2
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2049.2 1952 55.3
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2041.5 2075 52.8
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1931.8 2449 44.1
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1921.4 1840 54.6
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1892.1 2250 46.1
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1859.7 2406 44.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1701.0 2465 40.4
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1588.5 1515 54.9
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1575.8 1642 51.6
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1568.9 2315 39.3
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1550.4 1462 55.7
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1534.6 1461 55.3
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1457.6 1381 55.8
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1331.2 1462 49.5
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1220.7 1099 57.7
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1198.0 1384 47.1
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1126.3 1424 44.5
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1125.5 1507 41.6
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1097.0 1124 51.4
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 4.6e-296 1022.7 1042 52.0
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.9e-282 976.9 1004 50.5
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 3.0e-279 966.8 1036 49.3
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 5.3e-268 929.5 1396 41.0
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.0e-263 915.2 2509 29.2
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.9e-242 844.0 902 48.9
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.6e-232 810.4 2100 29.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 4.5e-227 793.5 2154 29.4
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.7e-210 738.4 1484 34.1
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 6.2e-208 729.9 851 46.5
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.4e-204 718.8 769 48.5
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.0e-198 698.4 799 46.6
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 8.7e-178 629.8 2355 25.0
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 8.7e-162 576.6 793 39.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.6e-152 545.8 579 46.8
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.6e-107 396.4 321 60.1
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.5e-100 373.2 478 42.7
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.8e-98 366.3 474 42.2
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 9.8e-97 360.5 403 47.1
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 8.3e-88 330.9 218 73.9
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 4.1e-87 328.6 326 50.6
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 5.4e-79 301.6 316 49.7
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 6.0e-78 298.1 372 41.4
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 2.1e-75 289.7 330 46.7
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.7e-70 272.7 339 42.5
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.0e-66 257.7 479 34.4
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 7.6e-65 254.6 221 57.9
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 4.8e-59 235.3 433 34.6
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 4.6e-54 218.8 150 73.3
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.5e-44 187.2 122 76.2
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.8e-43 183.0 382 31.9
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 8.2e-43 181.4 147 63.9
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.0e-40 174.5 186 47.8
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 3.2e-39 169.5 135 62.2
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.1e-38 166.8 790 24.1
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 7.9e-38 164.9 299 35.1
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-34 153.7 235 35.3
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 4.1e-34 152.5 238 41.2
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.3e-32 147.5 222 41.4
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 5.7e-28 132.1 193 41.5
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 7.4e-28 131.7 1067 20.2
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.7e-27 130.6 324 31.5
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 6.9e-26 125.2 126 46.0
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-25 124.4 276 30.1
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 3.4e-25 122.9 99 63.6
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-21 110.9 131 47.3
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 3.3e-20 106.3 156 37.2
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 2.8e-19 103.2 77 63.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 4.8e-19 102.4 76 65.8
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 4.1e-18 99.4 146 41.1
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-17 96.7 194 34.5
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 7.7e-17 95.1 80 53.8
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.0e-16 94.7 80 53.8
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 1.2e-14 87.8 103 45.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.8e-13 81.6 59 64.4
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.2e-11 77.0 69 55.1
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 2.4e-10 73.6 127 37.0
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 2.0e-09 70.5 95 38.9
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 5.9e-09 68.9 56 57.1
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 1.1e-07 64.7 69 50.7
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-06 61.2 129 31.8


User provided reference genes

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