Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 4.8e-305 1050.4 559 100.0
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 5.0e-238 827.8 566 80.4
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.6e-223 778.1 565 78.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 5.0e-169 598.6 477 76.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 3.8e-137 492.7 616 52.1
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 4.2e-136 489.2 561 56.9
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.8e-134 483.8 560 53.8
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 2.1e-127 460.3 627 48.3
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 7.5e-125 451.8 570 53.0
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 6.4e-124 448.7 615 48.0
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 1.4e-123 447.6 548 51.1
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 4.6e-122 442.6 558 50.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 3.1e-118 429.9 560 50.7
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 3.4e-117 426.4 573 49.2
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.7e-116 424.1 618 48.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 3.7e-116 422.9 584 48.8
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.1e-115 421.4 562 48.0
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.9e-115 420.6 579 51.3
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 3.2e-115 419.9 562 48.6
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.0e-113 414.8 567 52.0
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.0e-113 414.8 575 48.3
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 6.6e-113 412.1 595 47.6
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.1e-112 411.4 561 49.0
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 5.6e-112 409.1 513 51.1
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 2.1e-111 407.1 577 51.8
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 3.6e-111 406.4 602 47.5
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 3.6e-111 406.4 607 46.3
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.8e-110 402.1 561 48.1
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 6.8e-110 402.1 566 46.8
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 4.4e-109 399.4 615 45.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 7.5e-109 398.7 564 47.3
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 8.3e-108 395.2 625 44.8
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.1e-107 394.8 638 44.0
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.1e-107 394.8 576 46.5
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.9e-107 394.0 562 47.3
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 5.4e-107 392.5 616 45.8
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 5.4e-107 392.5 617 43.8
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 2.1e-106 390.6 561 45.8
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.5e-106 389.8 560 45.5
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.0e-105 388.3 524 46.4
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 2.3e-105 387.1 613 44.4
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 5.1e-105 386.0 514 47.7
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 5.1e-105 386.0 595 44.9
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 8.6e-105 385.2 562 45.4
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.1e-104 384.8 575 46.8
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.1e-104 384.8 559 45.8
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.9e-104 384.0 558 44.8
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 3.1e-102 376.7 583 42.9
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.6e-101 373.6 624 42.9
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 3.4e-101 373.2 559 46.9
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.4e-101 373.2 694 40.5
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 5.8e-101 372.5 566 45.6
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 7.6e-101 372.1 624 42.8
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 4.9e-100 369.4 564 45.2
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.9e-99 367.5 590 47.1
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.9e-99 367.5 601 46.4
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 4.2e-99 366.3 573 46.1
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 7.1e-99 365.5 569 44.3
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 9.2e-99 365.2 558 44.8
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 2.1e-98 364.0 569 44.1
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 2.7e-98 363.6 561 46.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 7.8e-98 362.1 561 45.3
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 7.8e-98 362.1 564 46.6
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.9e-96 357.5 497 46.7
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 3.6e-95 353.2 562 45.9
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 4.8e-95 352.8 584 45.0
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 8.1e-95 352.1 558 46.4
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.1e-94 351.7 576 43.4
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.9e-94 349.0 568 45.6
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 9.0e-94 348.6 560 46.4
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 8.4e-92 342.0 574 43.4
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.1e-91 341.7 602 42.7
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 1.4e-91 341.3 527 44.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.1e-91 339.0 565 43.9
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.6e-90 337.8 564 45.6
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.6e-90 337.8 561 41.9
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.7e-89 334.3 576 44.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 1.7e-89 334.3 561 41.4
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 8.7e-89 332.0 604 41.6
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 8.7e-89 332.0 548 42.2
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.9e-88 330.9 563 44.4
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.9e-88 330.9 563 44.4
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.6e-88 329.3 565 42.3
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 8.1e-87 325.5 562 43.1
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 4.0e-86 323.2 527 41.9
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.9e-84 317.0 568 44.7
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 4.9e-84 316.2 564 43.4
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.1e-83 315.1 224 70.5
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.2e-83 313.5 594 40.9
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.8e-79 300.4 239 65.3
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 4.8e-79 299.7 257 66.9
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.1e-78 298.5 367 50.4
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.4e-75 288.1 520 41.7
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 9.3e-75 285.4 513 41.3
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.1e-74 284.3 545 40.4
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 5.8e-69 266.2 634 38.2
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.5e-68 262.7 577 37.6
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 3.5e-66 256.9 149 81.2
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-65 253.4 226 58.8
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-64 251.1 244 59.0
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 3.3e-64 250.4 190 66.8
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.7e-64 248.8 179 70.4
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.8e-62 244.6 148 74.3
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.0e-61 241.1 190 65.3
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 4.5e-61 240.0 152 73.7
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 7.7e-61 239.2 168 70.2
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.3e-60 238.4 157 73.2
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.2e-58 231.9 319 47.0
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 2.5e-56 224.2 160 68.8
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 9.7e-56 222.2 149 71.1
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 2.8e-55 220.7 595 33.9
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 4.8e-55 219.9 217 56.2
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.4e-54 218.4 580 35.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.0e-53 214.5 218 54.1
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 2.9e-52 210.7 593 35.9
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 7.9e-50 202.6 113 78.8
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 7.9e-50 202.6 503 39.2
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-49 201.8 157 65.6
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.0e-49 200.7 218 53.2
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 2.0e-48 198.0 227 48.5
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 7.4e-48 196.1 113 75.2
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 4.1e-46 190.3 446 37.9
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.7e-36 158.3 192 47.4
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 8.5e-36 156.0 136 65.4
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-34 151.8 86 76.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-34 151.8 86 76.7
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 1.2e-32 145.6 216 39.8
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 4.4e-32 143.7 381 37.3
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 4.4e-32 143.7 381 37.3
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 7.5e-32 142.9 150 58.0
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.7e-31 141.7 498 29.1
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.7e-28 131.7 283 43.5
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.7e-28 131.7 138 63.0
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.9e-27 128.3 98 64.3
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.2e-24 119.0 178 47.2
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 3.4e-24 117.5 382 32.5
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 4.4e-24 117.1 203 40.4
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 7.5e-24 116.3 160 47.5
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 9.1e-22 109.4 140 51.4
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 1.5e-19 102.1 53 83.0
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.1e-18 96.7 66 68.2
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-15 89.0 134 42.5
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.0e-12 79.3 86 52.3
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 2.3e-12 78.2 226 36.7
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 6.6e-12 76.6 139 34.5
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 5.6e-11 73.6 64 60.9
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 5.6e-11 73.6 77 57.1
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 8.9e-09 66.2 107 43.0
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 1.7e-07 62.0 49 69.4
CsaV3_1G026630 Cucumis sativus L. HOM05D004380 ORTHO05D005134 8.3e-07 59.7 35 85.7
CsaV3_7G018470 Cucumis sativus L. HOM05D004380 ORTHO05D005134 8.3e-07 59.7 36 83.3
CsaV3_UNG068570 Cucumis sativus L. HOM05D004380 ORTHO05D005134 2.4e-06 58.2 35 82.9
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.0e-06 56.6 36 83.3


User provided reference genes

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