Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.2e-206 723.0 399 100.0
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 8.2e-150 534.3 419 76.4
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 3.2e-146 522.3 422 76.1
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.5e-138 496.1 411 72.7
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.7e-132 476.1 398 71.9
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.3e-82 309.3 386 50.8
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.1e-80 304.7 407 50.6
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 6.4e-78 295.4 402 50.2
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 9.3e-77 291.6 412 50.2
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.6e-76 290.8 418 48.6
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.0e-76 288.9 411 53.0
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.1e-74 284.6 405 48.1
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 4.3e-74 282.7 406 50.5
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.6e-73 280.8 397 52.6
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.8e-73 280.0 408 48.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 3.4e-71 273.1 395 49.9
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.4e-71 273.1 401 49.4
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.6e-71 271.9 406 45.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.7e-70 270.8 407 45.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.7e-70 270.8 384 49.7
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.7e-70 270.8 406 46.3
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.4e-70 268.5 405 45.9
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.9e-69 267.3 401 45.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.4e-69 266.9 394 49.2
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.4e-69 266.9 405 49.9
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 2.7e-68 263.5 413 45.8
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.5e-68 263.1 413 47.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.0e-67 261.5 397 45.6
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 3.9e-67 259.6 384 46.6
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 5.1e-67 259.2 384 45.3
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 5.1e-67 259.2 411 47.2
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 8.7e-67 258.5 393 46.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.1e-66 258.1 409 47.9
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.6e-66 255.8 393 46.8
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 5.6e-66 255.8 391 45.8
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.6e-65 254.2 400 44.5
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 8.1e-65 251.9 396 45.7
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.4e-64 251.1 396 45.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.4e-64 250.4 410 46.1
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 4.0e-64 249.6 396 42.9
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 6.9e-64 248.8 386 43.5
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 9.0e-64 248.4 403 49.1
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 9.0e-64 248.4 410 48.3
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.2e-63 248.1 389 42.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.4e-63 246.5 343 48.7
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 3.4e-63 246.5 393 44.0
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 5.8e-63 245.7 396 42.4
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.0e-62 245.0 396 42.7
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-62 244.2 395 46.8
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.9e-62 242.7 387 44.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 6.5e-62 242.3 410 42.7
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.1e-61 241.5 401 45.6
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.4e-61 241.1 385 47.0
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.9e-61 240.7 403 48.1
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 3.2e-61 240.0 396 42.9
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 7.1e-61 238.8 392 46.7
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.7e-60 236.9 385 43.1
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.5e-60 236.5 396 43.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.6e-60 236.1 392 42.3
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 4.6e-60 236.1 393 43.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 4.6e-60 236.1 395 48.6
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.0e-59 235.0 402 42.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.3e-59 234.6 401 42.4
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.1e-59 232.6 402 43.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.5e-58 230.3 394 45.9
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 5.7e-58 229.2 397 43.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 8.2e-57 225.3 403 43.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.1e-56 223.0 406 42.4
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 5.3e-56 222.6 385 42.1
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 6.9e-56 222.2 385 41.8
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.5e-55 221.1 394 42.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.4e-55 219.9 352 44.6
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.4e-55 219.9 445 43.8
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 7.6e-55 218.8 391 44.2
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.7e-54 217.6 392 42.9
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 7.2e-53 212.2 412 44.4
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 9.3e-53 211.8 345 46.7
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.6e-52 211.1 375 42.1
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.6e-52 211.1 410 40.7
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.7e-52 210.3 406 41.4
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.6e-52 209.5 292 49.0
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 5.1e-51 206.1 390 42.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 4.3e-50 203.0 388 40.7
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.4e-50 202.2 416 40.6
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.6e-49 201.1 415 41.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.8e-49 200.3 168 67.9
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.7e-49 199.9 414 43.7
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 8.2e-49 198.7 402 40.5
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 8.2e-49 198.7 415 39.8
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.1e-48 196.8 412 40.8
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.3e-48 196.1 389 38.8
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 6.9e-48 195.7 401 41.6
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 6.9e-48 195.7 401 41.6
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 6.9e-48 195.7 401 41.6
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 9.0e-48 195.3 413 43.6
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.2e-46 190.7 400 41.0
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.2e-46 190.7 400 41.0
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.2e-46 190.7 400 41.0
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.9e-46 190.3 410 43.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.8e-46 189.9 404 39.9
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 3.8e-46 189.9 404 39.9
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 6.5e-46 189.1 402 39.8
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 6.5e-46 189.1 402 39.8
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.4e-45 188.0 384 38.8
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.9e-45 187.6 342 38.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 7.2e-45 185.7 403 39.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 9.4e-45 185.3 380 39.2
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 9.4e-45 185.3 410 37.1
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-44 184.9 404 39.9
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.1e-44 184.1 358 40.5
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.8e-43 181.0 418 43.3
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.9e-43 179.9 417 40.3
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.7e-43 179.1 206 53.9
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.3e-41 174.9 393 40.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.7e-41 174.5 402 40.8
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.4e-40 171.4 382 39.8
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 9.1e-40 168.7 390 39.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.4e-37 161.4 152 62.5
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.9e-37 161.0 411 39.7
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.2e-36 158.3 418 39.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.2e-36 158.3 390 33.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.6e-36 156.8 404 38.4
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.6e-36 156.8 404 38.4
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.0e-35 153.7 410 36.1
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 7.4e-34 149.1 396 35.6
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.1e-32 145.2 355 35.5
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.4e-32 144.8 287 41.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.4e-32 144.8 415 32.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.1e-32 143.3 403 33.5
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.1e-32 143.3 355 38.3
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 3.5e-31 140.2 394 33.8
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.5e-31 139.8 403 35.5
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.1e-29 135.2 401 32.7
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 3.2e-29 133.7 282 39.0
MELO3C012884.2 Cucumis melo HOM05D005109 ORTHO05D006084 4.2e-29 133.3 139 54.0
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.5e-29 132.9 401 33.2
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.8e-25 119.8 262 40.5
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.3e-19 100.9 205 44.4
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.1e-16 89.0 205 36.6
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 7.7e-15 85.9 207 39.6
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.7e-14 84.7 154 38.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 6.1e-12 76.3 345 31.6
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 4.1e-08 63.5 159 40.3


User provided reference genes

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