Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 6.9e-113 410.6 201 100.0
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 4.3e-99 364.8 192 89.1
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 3.1e-97 358.6 192 89.1
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 2.0e-96 355.9 193 88.1
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 2.5e-86 322.4 191 77.5
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 4.2e-86 321.6 191 77.0
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.2e-86 320.9 191 75.9
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.6e-85 318.5 193 76.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.3e-84 315.8 191 77.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.3e-84 315.8 191 77.0
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.9e-84 315.1 191 76.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 5.2e-84 314.7 196 76.0
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 5.2e-84 314.7 191 75.9
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.0e-83 312.8 191 75.9
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 3.3e-83 312.0 191 74.3
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.7e-83 311.2 191 75.9
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 7.4e-83 310.8 191 73.8
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.3e-82 310.1 198 74.7
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.3e-82 310.1 192 75.0
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.7e-82 309.7 193 76.2
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 3.7e-82 308.5 190 75.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.7e-82 308.5 191 75.4
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 4.8e-82 308.1 190 74.7
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 4.8e-82 308.1 190 74.7
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.8e-82 308.1 191 75.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 8.2e-82 307.4 191 75.4
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.1e-81 307.0 191 73.8
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.1e-81 307.0 190 74.7
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.8e-81 306.2 191 74.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 5.3e-81 304.7 191 73.3
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.2e-80 303.5 191 74.3
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.2e-80 303.5 190 74.7
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.6e-80 303.1 191 72.8
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.6e-80 302.4 191 72.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.6e-80 302.4 191 72.8
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.6e-80 302.4 193 75.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.9e-80 301.2 192 72.9
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.9e-80 301.2 191 71.7
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.0e-79 300.4 192 72.4
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.0e-79 300.4 190 74.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.0e-79 300.4 193 73.6
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-79 300.1 192 76.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.7e-79 299.7 191 75.4
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.7e-79 299.7 190 73.7
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.7e-79 299.7 190 73.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.2e-79 299.3 192 76.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.1e-78 297.0 191 72.3
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.5e-78 296.6 191 71.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.5e-78 296.6 191 71.2
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.9e-78 296.2 205 71.7
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.5e-78 295.8 204 69.6
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 3.2e-78 295.4 188 73.9
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 4.2e-78 295.0 187 71.7
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 4.2e-78 295.0 194 69.1
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 5.5e-78 294.7 197 72.6
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 9.4e-78 293.9 182 73.1
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 9.4e-78 293.9 178 77.0
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-77 293.5 182 73.1
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.2e-77 293.5 194 73.2
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-77 293.5 193 72.0
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.6e-77 293.1 195 70.3
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.1e-77 292.7 191 71.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.7e-77 292.4 191 72.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.6e-77 292.0 196 69.9
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 3.6e-77 292.0 189 70.9
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 6.1e-77 291.2 191 71.7
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.1e-77 291.2 191 70.7
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.0e-76 290.4 195 70.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-76 289.7 191 70.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-76 289.7 191 70.2
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 2.3e-76 289.3 195 70.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.3e-76 289.3 190 71.1
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 2.3e-76 289.3 191 72.3
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 4.0e-76 288.5 190 71.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.0e-76 288.5 190 71.6
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.0e-76 288.5 191 70.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.0e-76 288.5 191 68.6
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 5.2e-76 288.1 191 69.6
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 8.8e-76 287.3 195 69.2
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 8.8e-76 287.3 191 69.1
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 8.8e-76 287.3 191 71.2
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.6e-75 285.8 190 71.1
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.3e-75 285.4 200 67.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.3e-75 285.4 193 68.4
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 5.7e-75 284.6 195 68.7
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 7.5e-75 284.3 190 70.0
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 9.7e-75 283.9 195 68.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.7e-74 283.1 198 68.7
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.8e-74 282.3 191 70.7
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-74 282.3 195 68.7
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.8e-74 282.3 195 68.7
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.8e-74 282.3 189 69.3
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 3.7e-74 282.0 193 68.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 6.3e-74 281.2 190 69.5
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.3e-74 281.2 191 69.6
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 8.2e-74 280.8 195 67.7
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-73 280.4 193 68.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-73 280.4 193 68.4
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.1e-73 280.4 195 68.7
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.4e-73 280.0 193 68.9
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.8e-73 279.6 193 65.3
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 2.4e-73 279.3 195 67.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 3.1e-73 278.9 193 68.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 4.1e-73 278.5 193 67.9
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 7.0e-73 277.7 196 68.4
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 9.1e-73 277.3 169 76.9
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 9.1e-73 277.3 193 68.4
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.2e-72 276.9 187 69.5
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.6e-72 276.6 195 68.2
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 2.7e-72 275.8 194 64.9
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.9e-72 274.6 172 75.0
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 7.7e-72 274.2 196 63.8
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.7e-71 273.1 196 66.8
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.2e-71 272.7 191 68.1
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.2e-71 272.7 190 65.8
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.7e-69 265.8 187 65.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 4.7e-69 265.0 192 64.6
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 8.0e-69 264.2 195 63.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 4.4e-67 258.5 181 69.1
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.4e-65 253.4 202 59.9
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.4e-65 251.5 151 76.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.0e-63 247.3 190 64.2
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.3e-63 246.9 197 63.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.8e-63 245.4 162 71.0
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 3.8e-63 245.4 190 63.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.3e-60 236.1 178 64.0
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 3.0e-60 235.7 141 77.3
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.6e-59 232.6 171 66.7
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.6e-56 223.4 192 55.7
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.0e-56 223.0 187 59.9
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.0e-55 218.4 191 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.2e-53 213.8 190 54.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.1e-53 213.0 246 46.3
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.2e-50 203.0 193 53.9
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.7e-50 202.2 176 54.5
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.9e-47 192.2 179 52.5
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.1e-44 182.6 120 70.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 4.0e-44 182.2 193 48.2
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.1e-40 169.9 175 50.9
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.5e-38 161.0 103 70.9
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 9.5e-38 161.0 117 66.7
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 5.8e-35 151.8 95 71.6
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-32 142.5 196 46.9
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 3.0e-31 139.4 173 49.7
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 4.7e-29 132.1 189 40.2
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.9e-25 120.2 207 34.8
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.3e-22 108.2 200 33.0
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 9.0e-20 101.3 70 67.1
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 9.9e-19 97.8 52 86.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 9.9e-19 97.8 52 86.5
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.9e-19 97.8 70 68.6
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 6.4e-18 95.1 71 60.6
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.5e-16 89.4 61 63.9
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-16 89.4 70 62.9
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.0e-15 86.3 95 46.3
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 5.1e-15 85.5 55 70.9
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.6e-15 85.1 70 62.9
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.6e-11 71.6 92 41.3
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 4.2e-09 65.9 55 58.2
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.9e-08 61.6 40 75.0
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.1e-06 57.8 40 55.0
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.5e-06 57.4 39 59.0
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.5e-06 57.4 39 59.0


User provided reference genes

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