Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 7.4e-109 397.1 189 100.0
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 7.0e-107 390.6 189 98.4
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 7.0e-107 390.6 189 98.4
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 7.0e-107 390.6 189 98.4
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.4e-104 382.9 188 95.7
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 2.5e-104 382.1 188 95.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 2.5e-104 382.1 188 95.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.5e-104 382.1 188 95.2
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.5e-104 382.1 189 95.2
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 3.2e-104 381.7 186 96.8
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 3.2e-104 381.7 185 97.3
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 4.2e-104 381.3 188 95.7
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 9.4e-104 380.2 188 95.2
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 9.4e-104 380.2 188 94.1
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.2e-103 379.8 186 95.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.6e-103 379.4 188 95.2
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.6e-103 379.4 186 95.2
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 2.1e-103 379.0 186 94.6
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 2.7e-103 378.6 185 96.2
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.7e-103 378.6 189 95.2
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 4.7e-103 377.9 188 94.7
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 6.1e-103 377.5 186 94.6
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.1e-103 377.5 185 95.1
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 8.0e-103 377.1 186 95.2
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 8.0e-103 377.1 186 95.2
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.0e-103 377.1 188 94.7
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 8.0e-103 377.1 186 95.7
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 8.0e-103 377.1 185 95.7
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 8.0e-103 377.1 185 95.7
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.2
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.2
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.7
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.7
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.7
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.7
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 96.7
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 94.6
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.0e-102 376.7 188 93.6
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.0e-102 376.7 188 93.6
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.4e-102 376.3 184 96.7
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.4e-102 376.3 185 95.7
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.8e-102 375.9 186 95.2
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 185 96.2
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 185 96.2
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 190 94.2
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.3e-102 375.6 188 94.7
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.0e-102 375.2 185 95.7
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.0e-102 375.2 186 94.6
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.9e-102 374.8 185 95.1
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-102 374.8 188 94.1
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.9e-102 374.8 188 94.1
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.9e-102 374.8 188 93.1
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 3.9e-102 374.8 186 94.1
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 8.8e-102 373.6 185 94.6
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.1e-101 373.2 186 94.1
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.1e-101 373.2 186 93.5
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 94.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 94.6
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 94.6
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.0e-101 372.5 184 95.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.0e-101 372.5 186 93.5
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 93.0
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 3.3e-101 371.7 188 92.6
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.3e-101 371.7 185 93.5
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 4.4e-101 371.3 186 93.0
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 4.4e-101 371.3 185 94.1
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.7e-101 370.9 185 95.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 5.7e-101 370.9 184 94.6
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 5.7e-101 370.9 185 94.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 5.7e-101 370.9 185 94.1
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 7.4e-101 370.5 190 92.6
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 9.7e-101 370.2 186 93.0
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.7e-101 370.2 186 93.0
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.7e-101 370.2 186 93.0
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 9.7e-101 370.2 185 93.5
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 1.3e-100 369.8 186 92.5
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 1.3e-100 369.8 186 92.5
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 1.3e-100 369.8 186 92.5
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-100 369.8 205 87.8
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.7e-100 369.4 186 93.0
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.7e-100 369.4 187 93.6
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.7e-100 369.4 190 92.6
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.2e-100 369.0 185 93.5
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.7e-100 368.2 184 92.9
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 3.7e-100 368.2 186 92.5
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 3.7e-100 368.2 186 92.5
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 4.8e-100 367.9 186 92.5
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 4.8e-100 367.9 186 92.5
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.8e-100 367.9 186 91.9
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 4.8e-100 367.9 186 91.4
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 6.3e-100 367.5 186 91.9
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 6.3e-100 367.5 186 91.4
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 6.3e-100 367.5 185 92.4
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.3e-100 367.5 185 93.0
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 8.2e-100 367.1 185 94.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 8.2e-100 367.1 186 91.9
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 8.2e-100 367.1 186 91.9
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 8.2e-100 367.1 185 91.4
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 8.2e-100 367.1 187 93.0
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 8.2e-100 367.1 185 93.5
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 94.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 91.9
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.1e-99 366.7 186 91.9
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.1e-99 366.7 186 91.9
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 91.9
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 91.9
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 91.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 91.9
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.8e-99 365.9 185 92.4
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.8e-99 365.9 185 91.9
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 92.4
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 3.1e-99 365.2 186 91.9
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 3.1e-99 365.2 186 91.9
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 3.1e-99 365.2 186 91.9
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 3.1e-99 365.2 186 92.5
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 91.9
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.9
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 92.4
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 90.8
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 5.3e-99 364.4 185 90.8
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 7.0e-99 364.0 186 91.4
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 2.6e-98 362.1 186 91.4
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.5e-98 361.7 202 87.1
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 4.5e-98 361.3 183 90.7
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 90.3
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 1.0e-97 360.1 185 91.4
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.7e-97 359.4 185 90.8
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.8e-97 358.2 189 89.4
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 3.8e-97 358.2 189 88.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 5.0e-97 357.8 193 88.1
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 8.5e-97 357.1 185 90.3
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.7e-95 352.1 181 91.2
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.7e-95 352.1 254 70.5
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.0e-94 348.6 182 86.8
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.7e-93 343.6 182 87.9
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.3e-92 343.2 186 84.9
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-89 333.6 183 88.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 6.5e-89 330.9 186 79.6
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.5e-88 328.9 158 96.8
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.2e-88 328.6 191 82.2
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.4e-88 327.0 182 84.1
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.0e-82 309.3 186 80.1
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.5e-80 303.1 152 90.1
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.8e-79 298.9 144 97.2
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.4e-75 284.6 141 93.6
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.2e-74 283.5 142 90.1
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 2.9e-73 278.9 140 90.7
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.2e-68 262.7 130 91.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.7e-68 261.9 136 89.7
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 9.2e-67 257.3 147 85.0
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 7.8e-66 254.2 163 77.3
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.0e-65 253.8 128 87.5
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.7e-65 253.1 186 71.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.0e-65 251.5 186 69.4
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 9.2e-59 230.7 188 53.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.5e-56 223.4 187 55.6
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 9.9e-53 210.7 166 66.3
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.9e-49 198.7 157 66.2
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.2e-46 188.3 90 93.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.8e-45 184.9 115 76.5
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.2e-42 177.2 87 90.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-42 176.4 103 78.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.5e-42 175.6 87 89.7
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.0e-42 174.9 90 87.8
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 6.0e-42 174.9 87 89.7
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.3e-41 172.9 87 89.7
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-41 172.2 87 88.5
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.9e-41 172.2 87 88.5
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.0e-38 161.0 87 86.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-37 160.6 157 54.8
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 4.9e-36 155.2 96 80.2
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 3.2e-35 152.5 98 77.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.4e-35 151.8 79 86.1
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.7e-33 146.7 69 89.9
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 5.6e-32 141.7 70 97.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.4e-28 127.9 62 88.7
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.4e-28 127.9 62 88.7
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.4e-28 127.9 62 88.7
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.4e-28 127.9 62 88.7
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.4e-28 127.9 62 88.7
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.4e-28 127.9 62 88.7
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 3.3e-16 89.4 47 91.5
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 9.6e-16 87.8 44 90.9
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.0e-12 77.8 55 70.9


User provided reference genes

Program Settings